LOC_Os03g07940.1

Description : transcription factor (AP2)

Gene families : OG0000068 (Archaeplastida) Phylogenetic Tree(s): OG0000068_tree ,
OG_05_0000090 (LandPlants) Phylogenetic Tree(s): OG_05_0000090_tree ,
OG_06_0000054 (SeedPlants) Phylogenetic Tree(s): OG_06_0000054_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g07940.1
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00086450	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00058p00216470	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00065p00077750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00066p00028460	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AT1G72570	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT3G54320	WRI1, ATWRI1, ASML1, WRI	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT5G17430	BBM	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Cre08.g385350	No alias	No description available	0.01	Archaeplastida
Cre10.g441300	No alias	AP2-like ethylene-responsive transcription factor ANT...	0.02	Archaeplastida
GSVIVT01002536001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01016097001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01016352001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01023697001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01025548001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01027345001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
Gb_05487	No alias	transcription factor (AP2)	0.02	Archaeplastida
Gb_33988	No alias	transcription factor (AP2)	0.03	Archaeplastida
LOC_Os01g59780.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
LOC_Os03g60430.2	No alias	transcription factor (AP2)	0.03	Archaeplastida
LOC_Os07g13170.2	No alias	transcription factor (AP2)	0.04	Archaeplastida
LOC_Os11g03540.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
MA_10005612g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_113625g0010	No alias	no hits & (original description: none)	0.07	Archaeplastida
MA_196219g0010	No alias	transcription factor (AP2)	0.05	Archaeplastida
MA_86195g0010	No alias	transcription factor (AP2)	0.08	Archaeplastida
MA_95471g0010	No alias	transcription factor (AP2)	0.02	Archaeplastida
Mp7g13270.1	No alias	transcription factor (AP2)	0.02	Archaeplastida
Pp3c12_12460V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c15_24980V3.1	No alias	AINTEGUMENTA-like 5	0.02	Archaeplastida
Solyc02g064960.3.1	No alias	transcription factor (AP2)	0.01	Archaeplastida
Solyc03g044300.3.1	No alias	transcription factor (AP2)	0.05	Archaeplastida
Solyc11g008560.2.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Solyc11g061750.2.1	No alias	transcription factor (AP2)	0.02	Archaeplastida
Zm00001e005817_P003	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e006752_P001	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e011951_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e015104_P001	No alias	transcription factor (AP2)	0.06	Archaeplastida
Zm00001e018951_P001	No alias	transcription factor (AP2)	0.07	Archaeplastida
Zm00001e024044_P002	No alias	transcription factor (AP2)	0.02	Archaeplastida
Zm00001e027593_P003	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e032754_P003	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e037696_P002	No alias	transcription factor (AP2)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0004478	methionine adenosyltransferase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004556	alpha-amylase activity	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015696	ammonium transport	IEP	Neighborhood
MF	GO:0016160	amylase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
MF	GO:0061135	endopeptidase regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	220	269

External Links

No external refs found!

LOC_Os03g07940.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation