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  5. LOC_Os03g10440.1

LOC_Os03g10440.1


Description : no description available(sp|a0a1p8b8f8|xyn5_arath : 380.0)


Gene families : OG0001243 (Archaeplastida) Phylogenetic Tree(s): OG0001243_tree ,
OG_05_0000962 (LandPlants) Phylogenetic Tree(s): OG_05_0000962_tree ,
OG_06_0002114 (SeedPlants) Phylogenetic Tree(s): OG_06_0002114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g10440.1
Cluster HCCA: Cluster_355

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00160040 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
GSVIVT01037825001 No alias No description available 0.03 Archaeplastida
GSVIVT01037832001 No alias No description available 0.03 Archaeplastida
GSVIVT01037833001 No alias No description available 0.03 Archaeplastida
Gb_02219 No alias no description available(sp|q84wt5|xyn5l_arath : 355.0) 0.02 Archaeplastida
MA_10433351g0010 No alias no description available(sp|q84wt5|xyn5l_arath : 209.0) 0.03 Archaeplastida
Smo420481 No alias No description available 0.04 Archaeplastida
Zm00001e001013_P003 No alias no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.04 Archaeplastida
Zm00001e038772_P001 No alias no description available(sp|q84wt5|xyn5l_arath : 392.0) 0.03 Archaeplastida
Zm00001e040632_P001 No alias no description available(sp|q680b7|xyn4_arath : 318.0) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001000 GH10 226 486
IPR003305 CenC_carb-bd 51 167
No external refs found!