AT1G29390 (COR314-TM2, COR413IM2)

Aliases : COR314-TM2, COR413IM2

Description : cold regulated 314 thylakoid membrane 2

Gene families : OG0005939 (Archaeplastida) Phylogenetic Tree(s): OG0005939_tree ,
OG_05_0004307 (LandPlants) Phylogenetic Tree(s): OG_05_0004307_tree ,
OG_06_0005498 (SeedPlants) Phylogenetic Tree(s): OG_06_0005498_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G29390
Cluster	HCCA: Cluster_227

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os05g49170.1	No alias	Cold-regulated 413 inner membrane protein 1,...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0006873	cellular ion homeostasis	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009414	response to water deprivation	None	Extended
BP	GO:0009415	response to water	None	Extended
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009631	cold acclimation	IMP	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
BP	GO:0030003	cellular cation homeostasis	RCA	Interproscan
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031300	intrinsic component of organelle membrane	None	Extended
CC	GO:0031301	integral component of organelle membrane	None	Extended
CC	GO:0031350	intrinsic component of plastid membrane	None	Extended
CC	GO:0031351	integral component of plastid membrane	None	Extended
CC	GO:0031352	intrinsic component of plastid inner membrane	None	Extended
CC	GO:0031353	integral component of plastid inner membrane	None	Extended
CC	GO:0031356	intrinsic component of chloroplast inner membrane	None	Extended
CC	GO:0031357	integral component of chloroplast inner membrane	IDA	Interproscan
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0042631	cellular response to water deprivation	RCA	Interproscan
CC	GO:0042651	thylakoid membrane	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050801	ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0055080	cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070417	cellular response to cold	IEP	Interproscan
BP	GO:0070838	divalent metal ion transport	RCA	Interproscan
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071229	cellular response to acid chemical	None	Extended
BP	GO:0071462	cellular response to water stimulus	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0072511	divalent inorganic cation transport	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002238	response to molecule of fungal origin	IEP	Neighborhood
MF	GO:0005372	water transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0006733	oxidoreduction coenzyme metabolic process	IEP	Neighborhood
BP	GO:0006833	water transport	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0006972	hyperosmotic response	IEP	Neighborhood
BP	GO:0007030	Golgi organization	IEP	Neighborhood
MF	GO:0008506	sucrose:proton symporter activity	IEP	Neighborhood
MF	GO:0008515	sucrose transmembrane transporter activity	IEP	Neighborhood
BP	GO:0008643	carbohydrate transport	IEP	Neighborhood
BP	GO:0009269	response to desiccation	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
BP	GO:0009617	response to bacterium	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
MF	GO:0009669	sucrose:cation symporter activity	IEP	Neighborhood
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009804	coumarin metabolic process	IEP	Neighborhood
BP	GO:0009805	coumarin biosynthetic process	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0009915	phloem sucrose loading	IEP	Neighborhood
BP	GO:0009965	leaf morphogenesis	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010232	vascular transport	IEP	Neighborhood
BP	GO:0010233	phloem transport	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
MF	GO:0015154	disaccharide transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015157	oligosaccharide transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015250	water channel activity	IEP	Neighborhood
BP	GO:0015766	disaccharide transport	IEP	Neighborhood
BP	GO:0015770	sucrose transport	IEP	Neighborhood
BP	GO:0015772	oligosaccharide transport	IEP	Neighborhood
MF	GO:0016695	oxidoreductase activity, acting on hydrogen as donor	IEP	Neighborhood
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Neighborhood
BP	GO:0016999	antibiotic metabolic process	IEP	Neighborhood
BP	GO:0017001	antibiotic catabolic process	IEP	Neighborhood
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0033354	chlorophyll cycle	IEP	Neighborhood
BP	GO:0042044	fluid transport	IEP	Neighborhood
BP	GO:0042538	hyperosmotic salinity response	IEP	Neighborhood
BP	GO:0042742	defense response to bacterium	IEP	Neighborhood
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	Neighborhood
BP	GO:0043085	positive regulation of catalytic activity	IEP	Neighborhood
BP	GO:0044093	positive regulation of molecular function	IEP	Neighborhood
MF	GO:0044183	protein binding involved in protein folding	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Neighborhood
BP	GO:0046686	response to cadmium ion	IEP	Neighborhood
MF	GO:0046995	oxidoreductase activity, acting on hydrogen as donor, with other known acceptors	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
MF	GO:0050454	coenzyme F420 hydrogenase activity	IEP	Neighborhood
BP	GO:0050790	regulation of catalytic activity	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	Neighborhood
BP	GO:0061077	chaperone-mediated protein folding	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Neighborhood
MF	GO:0090415	7-hydroxymethyl chlorophyll a reductase activity	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008892	COR413	49	217

External Links

No external refs found!

AT1G29390 (COR314-TM2, COR413IM2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation