LOC_Os03g16850.1

Description : transcription factor (DOF)

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0017237 (SeedPlants) Phylogenetic Tree(s): OG_06_0017237_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g16850.1
Cluster	HCCA: Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
AMTR_s00010p00264070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00069p00049300	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00119p00099150	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
AMTR_s00160p00038440	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00160p00046100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT1G21340	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT1G29160	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT2G28810	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT2G34140	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT2G37590	DOF2.4, ATDOF2.4	DNA binding with one finger 2.4	0.07	Archaeplastida
AT2G46590	DAG2	Dof-type zinc finger DNA-binding family protein	0.06	Archaeplastida
AT3G21270	ADOF2, DOF2	DOF zinc finger protein 2	0.02	Archaeplastida
AT3G55370	OBP3	OBF-binding protein 3	0.03	Archaeplastida
AT3G61850	DAG1	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT4G24060	No alias	Dof-type zinc finger DNA-binding family protein	0.05	Archaeplastida
AT4G38000	DOF4.7	DNA binding with one finger 4.7	0.03	Archaeplastida
AT5G02460	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Archaeplastida
AT5G62940	HCA2, DOF5.6	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G65590	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G66940	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
GSVIVT01002242001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01005057001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01007992001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01021085001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01021086001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01025119001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01034189001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01038591001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
Gb_12877	No alias	transcription factor (DOF)	0.02	Archaeplastida
Gb_20130	No alias	transcription factor (DOF)	0.02	Archaeplastida
Gb_20144	No alias	transcription factor (DOF)	0.05	Archaeplastida
Gb_35447	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os01g17000.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os01g55340.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os02g47810.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os07g13260.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
MA_123810g0010	No alias	transcription factor (DOF)	0.02	Archaeplastida
MA_16692g0010	No alias	transcription factor (DOF)	0.02	Archaeplastida
MA_248613g0010	No alias	No annotation	0.03	Archaeplastida
MA_459791g0010	No alias	transcription factor (DOF)	0.02	Archaeplastida
MA_56828g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_7537g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_83624g0010	No alias	transcription factor (DOF)	0.02	Archaeplastida
Mp2g20790.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Pp3c16_6460V3.1	No alias	cycling DOF factor 2	0.02	Archaeplastida
Pp3c17_3860V3.1	No alias	OBF binding protein 4	0.02	Archaeplastida
Pp3c17_7930V3.1	No alias	cycling DOF factor 2	0.03	Archaeplastida
Pp3c9_4910V3.1	No alias	cycling DOF factor 2	0.03	Archaeplastida
Smo89924	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Solyc02g077950.3.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
Solyc02g078620.1.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
Solyc02g090220.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc02g090310.1.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc03g112930.3.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
Solyc03g115940.4.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc03g121400.1.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc05g054510.2.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc06g071480.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc06g076030.3.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
Solyc09g010680.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc10g009360.4.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc10g086440.2.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc11g010940.2.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc11g066050.1.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc11g072500.2.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e001988_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e002951_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e004476_P002	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e004809_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e005785_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e006190_P001	No alias	transcription factor (DOF)	0.07	Archaeplastida
Zm00001e006527_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e007228_P002	No alias	transcription factor (DOF)	0.07	Archaeplastida
Zm00001e010454_P001	No alias	transcription factor (DOF)	0.09	Archaeplastida
Zm00001e011750_P002	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e012437_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e012824_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e015414_P004	No alias	transcription factor (DOF)	0.08	Archaeplastida
Zm00001e015597_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e018163_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e019172_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.07	Archaeplastida
Zm00001e023334_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e027411_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e027634_P002	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e028672_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e029641_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e035074_P001	No alias	transcription factor (DOF)	0.1	Archaeplastida
Zm00001e035892_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e038479_P002	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e041444_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
BP	GO:0005991	trehalose metabolic process	IEP	Neighborhood
BP	GO:0005992	trehalose biosynthetic process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0046351	disaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	90	145

External Links

No external refs found!

LOC_Os03g16850.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation