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  5. LOC_Os03g17030.1

LOC_Os03g17030.1


Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000771 (Archaeplastida) Phylogenetic Tree(s): OG0000771_tree ,
OG_05_0000645 (LandPlants) Phylogenetic Tree(s): OG_05_0000645_tree ,
OG_06_0008219 (SeedPlants) Phylogenetic Tree(s): OG_06_0008219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g17030.1
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT1G22760 PAB3 poly(A) binding protein 3 0.03 Archaeplastida
GSVIVT01016951001 No alias Protein biosynthesis.translation initiation.mRNA... 0.02 Archaeplastida
Solyc09g008620.3.1 No alias mRNA poly-A-tail binding factor (PABP) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR002004 PABP_HYD 555 620
IPR000504 RRM_dom 128 197
IPR000504 RRM_dom 40 110
IPR000504 RRM_dom 321 389
IPR000504 RRM_dom 218 286
No external refs found!