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  5. LOC_Os03g19980.2

LOC_Os03g19980.2


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 349.0)


Gene families : OG0021321 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0014127 (LandPlants) Phylogenetic Tree(s): OG_05_0014127_tree ,
OG_06_0013077 (SeedPlants) Phylogenetic Tree(s): OG_06_0013077_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g19980.2
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Zm00001e038303_P001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006658 phosphatidylserine metabolic process IEP Neighborhood
BP GO:0006659 phosphatidylserine biosynthetic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 142 162
IPR002885 Pentatricopeptide_repeat 437 463
IPR002885 Pentatricopeptide_repeat 466 493
IPR002885 Pentatricopeptide_repeat 538 563
IPR002885 Pentatricopeptide_repeat 501 528
IPR002885 Pentatricopeptide_repeat 170 199
IPR002885 Pentatricopeptide_repeat 229 276
IPR002885 Pentatricopeptide_repeat 361 408
No external refs found!