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  5. AMTR_s00003p00263450

AMTR_s00003p00263450 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.353

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nhp2/Naf1 non-core component


Gene families : OG0004458 (Archaeplastida) Phylogenetic Tree(s): OG0004458_tree ,
OG_05_0004650 (LandPlants) Phylogenetic Tree(s): OG_05_0004650_tree ,
OG_06_0006012 (SeedPlants) Phylogenetic Tree(s): OG_06_0006012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00263450
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
Cre10.g467100 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 Archaeplastida
GSVIVT01030569001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 Archaeplastida
Gb_27768 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.02 Archaeplastida
LOC_Os05g42300.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.04 Archaeplastida
Mp8g14120.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.02 Archaeplastida
Solyc07g054460.4.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.03 Archaeplastida
Zm00001e032062_P001 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030515 snoRNA binding IEA Interproscan
BP GO:0031120 snRNA pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 260 399
No external refs found!