Coexpression cluster: Cluster_235 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0097159 organic cyclic compound binding 33.33% (17/51) 1.57 2.4e-05 0.002073
GO:0005488 binding 45.1% (23/51) 1.2 3.4e-05 0.002159
GO:1901363 heterocyclic compound binding 33.33% (17/51) 1.57 2.4e-05 0.003097
GO:0003676 nucleic acid binding 21.57% (11/51) 2.27 1.2e-05 0.003148
GO:0090304 nucleic acid metabolic process 11.76% (6/51) 2.86 0.000171 0.008684
GO:0016070 RNA metabolic process 9.8% (5/51) 3.14 0.000251 0.010646
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 1.96% (1/51) 9.06 0.001867 0.017566
GO:0048478 replication fork protection 1.96% (1/51) 9.06 0.001867 0.017566
GO:2000104 negative regulation of DNA-dependent DNA replication 1.96% (1/51) 9.06 0.001867 0.017566
GO:0008156 negative regulation of DNA replication 1.96% (1/51) 9.06 0.001867 0.017566
GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters 1.96% (1/51) 9.06 0.001867 0.017566
GO:0090329 regulation of DNA-dependent DNA replication 1.96% (1/51) 9.06 0.001867 0.017566
GO:0051053 negative regulation of DNA metabolic process 1.96% (1/51) 9.06 0.001867 0.017566
GO:0004532 exoribonuclease activity 1.96% (1/51) 9.06 0.001867 0.017566
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 1.96% (1/51) 9.06 0.001867 0.017566
GO:0000175 3'-5'-exoribonuclease activity 1.96% (1/51) 9.06 0.001867 0.017566
GO:0045005 DNA-dependent DNA replication maintenance of fidelity 1.96% (1/51) 9.06 0.001867 0.017566
GO:0044422 organelle part 7.84% (4/51) 2.89 0.002049 0.01795
GO:0044446 intracellular organelle part 7.84% (4/51) 2.89 0.002049 0.01795
GO:0009890 negative regulation of biosynthetic process 1.96% (1/51) 8.06 0.003731 0.019744
GO:0005730 nucleolus 1.96% (1/51) 8.06 0.003731 0.019744
GO:0031327 negative regulation of cellular biosynthetic process 1.96% (1/51) 8.06 0.003731 0.019744
GO:0010558 negative regulation of macromolecule biosynthetic process 1.96% (1/51) 8.06 0.003731 0.019744
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 1.96% (1/51) 8.06 0.003731 0.019744
GO:0051172 negative regulation of nitrogen compound metabolic process 1.96% (1/51) 8.06 0.003731 0.019744
GO:0031324 negative regulation of cellular metabolic process 1.96% (1/51) 8.06 0.003731 0.019744
GO:0030515 snoRNA binding 1.96% (1/51) 8.06 0.003731 0.019744
GO:0031120 snRNA pseudouridine synthesis 1.96% (1/51) 8.06 0.003731 0.019744
GO:0040031 snRNA modification 1.96% (1/51) 8.06 0.003731 0.019744
GO:0044428 nuclear part 5.88% (3/51) 4.17 0.000622 0.022569
GO:0060089 molecular transducer activity 3.92% (2/51) 4.67 0.002806 0.023757
GO:0000156 phosphorelay response regulator activity 3.92% (2/51) 5.54 0.000843 0.023803
GO:0006139 nucleobase-containing compound metabolic process 11.76% (6/51) 2.46 0.000755 0.023956
GO:0001882 nucleoside binding 5.88% (3/51) 3.3 0.003522 0.024181
GO:0001883 purine nucleoside binding 5.88% (3/51) 3.31 0.003462 0.024427
GO:0032550 purine ribonucleoside binding 5.88% (3/51) 3.31 0.003462 0.024427
GO:0032561 guanyl ribonucleotide binding 5.88% (3/51) 3.31 0.003462 0.024427
GO:0005525 GTP binding 5.88% (3/51) 3.31 0.003462 0.024427
GO:0032549 ribonucleoside binding 5.88% (3/51) 3.31 0.003462 0.024427
GO:0072509 divalent inorganic cation transmembrane transporter activity 1.96% (1/51) 7.48 0.005591 0.024487
GO:0010605 negative regulation of macromolecule metabolic process 1.96% (1/51) 7.48 0.005591 0.024487
GO:0015093 ferrous iron transmembrane transporter activity 1.96% (1/51) 7.48 0.005591 0.024487
GO:0006275 regulation of DNA replication 1.96% (1/51) 7.48 0.005591 0.024487
GO:0016073 snRNA metabolic process 1.96% (1/51) 7.48 0.005591 0.024487
GO:0015684 ferrous iron transport 1.96% (1/51) 7.48 0.005591 0.024487
GO:0009892 negative regulation of metabolic process 1.96% (1/51) 7.48 0.005591 0.024487
GO:0035639 purine ribonucleoside triphosphate binding 15.69% (8/51) 1.69 0.002992 0.024517
GO:0019001 guanyl nucleotide binding 5.88% (3/51) 3.27 0.003707 0.024779
GO:0003674 molecular_function 54.9% (28/51) 0.74 0.000977 0.024824
GO:0097367 carbohydrate derivative binding 15.69% (8/51) 1.53 0.005825 0.025078
GO:0006725 cellular aromatic compound metabolic process 11.76% (6/51) 2.27 0.001435 0.026029
GO:1901360 organic cyclic compound metabolic process 11.76% (6/51) 2.23 0.001655 0.026279
GO:0000160 phosphorelay signal transduction system 3.92% (2/51) 5.31 0.001165 0.02689
GO:0034641 cellular nitrogen compound metabolic process 13.73% (7/51) 2.07 0.001289 0.027287
GO:0032555 purine ribonucleotide binding 15.69% (8/51) 1.56 0.005266 0.027296
GO:0046483 heterocycle metabolic process 11.76% (6/51) 2.28 0.001413 0.027605
GO:0017076 purine nucleotide binding 15.69% (8/51) 1.55 0.00544 0.027636
GO:0032553 ribonucleotide binding 15.69% (8/51) 1.54 0.005551 0.027647
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 3.92% (2/51) 5.06 0.001636 0.0277
GO:0051052 regulation of DNA metabolic process 1.96% (1/51) 7.06 0.007448 0.031015
GO:0005669 transcription factor TFIID complex 1.96% (1/51) 7.06 0.007448 0.031015
GO:0005381 iron ion transmembrane transporter activity 1.96% (1/51) 6.74 0.009302 0.038109
GO:0000166 nucleotide binding 15.69% (8/51) 1.4 0.010056 0.039298
GO:1901265 nucleoside phosphate binding 15.69% (8/51) 1.4 0.010056 0.039298
GO:0036094 small molecule binding 15.69% (8/51) 1.33 0.013185 0.039401
GO:0043167 ion binding 21.57% (11/51) 1.07 0.013077 0.039543
GO:0035556 intracellular signal transduction 3.92% (2/51) 3.74 0.009844 0.039687
GO:0031323 regulation of cellular metabolic process 7.84% (4/51) 2.14 0.012891 0.039931
GO:0010556 regulation of macromolecule biosynthetic process 7.84% (4/51) 2.16 0.012108 0.039941
GO:0031326 regulation of cellular biosynthetic process 7.84% (4/51) 2.16 0.012108 0.039941
GO:0009889 regulation of biosynthetic process 7.84% (4/51) 2.16 0.012108 0.039941
GO:2000112 regulation of cellular macromolecule biosynthetic process 7.84% (4/51) 2.16 0.012108 0.039941
GO:0019222 regulation of metabolic process 7.84% (4/51) 2.13 0.013069 0.039995
GO:0060255 regulation of macromolecule metabolic process 7.84% (4/51) 2.14 0.012802 0.040146
GO:0003723 RNA binding 5.88% (3/51) 2.59 0.013619 0.040225
GO:0080090 regulation of primary metabolic process 7.84% (4/51) 2.14 0.012714 0.040368
GO:0051171 regulation of nitrogen compound metabolic process 7.84% (4/51) 2.14 0.012714 0.040368
GO:0016879 ligase activity, forming carbon-nitrogen bonds 3.92% (2/51) 3.56 0.012591 0.041002
GO:0044391 ribosomal subunit 1.96% (1/51) 6.48 0.011152 0.041053
GO:0006826 iron ion transport 1.96% (1/51) 6.48 0.011152 0.041053
GO:0015934 large ribosomal subunit 1.96% (1/51) 6.48 0.011152 0.041053
GO:0007049 cell cycle 1.96% (1/51) 6.48 0.011152 0.041053
GO:0008026 ATP-dependent helicase activity 3.92% (2/51) 3.61 0.011812 0.041099
GO:0070035 purine NTP-dependent helicase activity 3.92% (2/51) 3.61 0.011812 0.041099
GO:0043168 anion binding 15.69% (8/51) 1.36 0.011464 0.041598
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.84% (4/51) 2.18 0.01177 0.042108
GO:0048523 negative regulation of cellular process 1.96% (1/51) 6.06 0.014843 0.043333
GO:0032774 RNA biosynthetic process 3.92% (2/51) 3.38 0.015924 0.045963
GO:0046915 transition metal ion transmembrane transporter activity 1.96% (1/51) 5.89 0.016683 0.046565
GO:0004674 protein serine/threonine kinase activity 1.96% (1/51) 5.89 0.016683 0.046565
GO:0005575 cellular_component 19.61% (10/51) 1.09 0.016326 0.046593
GO:0034660 ncRNA metabolic process 3.92% (2/51) 3.32 0.01711 0.047239
GO:0008270 zinc ion binding 7.84% (4/51) 1.99 0.01794 0.048996
GO:0008408 3'-5' exonuclease activity 1.96% (1/51) 5.74 0.018519 0.048999
GO:0070838 divalent metal ion transport 1.96% (1/51) 5.74 0.018519 0.048999
GO:0009987 cellular process 21.57% (11/51) 1.0 0.018363 0.049618
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_16 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_17 0.034 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_24 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_40 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_47 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_76 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_86 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_102 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_160 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.062 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_184 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_211 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_227 0.03 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_232 0.045 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_235 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_242 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_20 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_57 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_128 0.033 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_144 0.031 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_185 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_211 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_215 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_248 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_251 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_264 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_22 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_96 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_34 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.033 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_135 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_202 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_220 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_301 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_314 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_324 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.04 Archaeplastida Compare
Zea mays HCCA Cluster_12 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.041 Archaeplastida Compare
Zea mays HCCA Cluster_95 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_126 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_148 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_158 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_185 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.051 Archaeplastida Compare
Zea mays HCCA Cluster_283 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_367 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_173 0.033 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_11 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.071 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_170 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_191 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.046 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.041 Archaeplastida Compare
Picea abies HCCA Cluster_93 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_197 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_238 0.036 Archaeplastida Compare
Picea abies HCCA Cluster_279 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_354 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_399 0.035 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_454 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_469 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_472 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_490 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_496 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_498 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_512 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_527 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_540 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_21 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_49 0.041 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_63 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_88 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.031 Archaeplastida Compare
Oryza sativa HCCA Cluster_139 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_163 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_167 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.034 Archaeplastida Compare
Oryza sativa HCCA Cluster_186 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_193 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_254 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_257 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_279 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_297 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_311 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_312 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_348 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_25 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_36 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_40 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.029 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_141 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_147 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_163 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_179 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_188 0.028 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_199 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_204 0.031 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_213 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_221 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_33 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_75 0.041 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.037 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_125 0.034 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_128 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_131 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_140 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_179 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.079 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_215 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.041 Archaeplastida Compare
Vitis vinifera HCCA Cluster_83 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_137 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_143 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_155 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.031 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_184 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_185 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.071 Archaeplastida Compare
Vitis vinifera HCCA Cluster_199 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_219 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_228 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_235 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_247 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_32 0.027 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_36 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.034 Archaeplastida Compare
Sequences (51) (download table)

InterPro Domains

GO Terms

Family Terms