LOC_Os03g47140.1

Description : component GRF of GRF-GIF transcriptional complex

Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0017597 (LandPlants) Phylogenetic Tree(s): OG_05_0017597_tree ,
OG_06_0017099 (SeedPlants) Phylogenetic Tree(s): OG_06_0017099_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g47140.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00189460	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	Archaeplastida
AMTR_s00069p00196720	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.06	Archaeplastida
AT4G37740	GRF2, AtGRF2	growth-regulating factor 2	0.04	Archaeplastida
GSVIVT01007165001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
GSVIVT01015095001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	Archaeplastida
GSVIVT01016762001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	Archaeplastida
GSVIVT01019667001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	Archaeplastida
GSVIVT01019913001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
GSVIVT01024326001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
GSVIVT01027535001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
GSVIVT01033800001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	Archaeplastida
GSVIVT01038629001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
Gb_20443	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Gb_26136	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Mp8g16900.1	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Pp3c12_3720V3.1	No alias	growth-regulating factor 2	0.03	Archaeplastida
Solyc01g091540.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.07	Archaeplastida
Solyc02g092070.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Solyc03g082430.1.1	No alias	component GRF of GRF-GIF transcriptional complex	0.08	Archaeplastida
Solyc04g077510.4.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc07g041640.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Solyc08g005430.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.08	Archaeplastida
Solyc09g009200.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Solyc10g083510.2.1	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Solyc12g096070.2.1	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Zm00001e005165_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e011207_P003	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Zm00001e012104_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Zm00001e012291_P001	No alias	Growth-regulating factor 9 OS=Oryza sativa subsp....	0.02	Archaeplastida
Zm00001e015436_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Zm00001e015561_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Zm00001e029851_P005	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e030774_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e036657_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	152	194
IPR014978	Gln-Leu-Gln_QLQ	92	125

External Links

No external refs found!

LOC_Os03g47140.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation