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  5. LOC_Os03g49710.1

LOC_Os03g49710.1


Description : component mtRPS13|psRPS13 of small ribosomal subunit proteome. component psRPS13|mtRPS13 of small ribosomal subunit proteome


Gene families : OG0005606 (Archaeplastida) Phylogenetic Tree(s): OG0005606_tree ,
OG_05_0007082 (LandPlants) Phylogenetic Tree(s): OG_05_0007082_tree ,
OG_06_0009507 (SeedPlants) Phylogenetic Tree(s): OG_06_0009507_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g49710.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00089340 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.08 Archaeplastida
AT5G14320 No alias Ribosomal protein S13/S18 family 0.32 Archaeplastida
Cre12.g493950 No alias Protein biosynthesis.organelle translation... 0.17 Archaeplastida
GSVIVT01008933001 No alias Protein biosynthesis.organelle translation... 0.13 Archaeplastida
Gb_24491 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.04 Archaeplastida
MA_10431241g0010 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.07 Archaeplastida
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.24 Archaeplastida
Pp3c15_12110V3.1 No alias Ribosomal protein S13/S18 family 0.17 Archaeplastida
Pp3c15_12140V3.1 No alias Ribosomal protein S13/S18 family 0.18 Archaeplastida
Solyc05g005880.2.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.13 Archaeplastida
Zm00001e005396_P004 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.3 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006433 prolyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006450 regulation of translational fidelity IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 48 152
No external refs found!