Coexpression cluster: Cluster_90 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044424 intracellular part 16.96% (38/224) 2.58 0.0 0.0
GO:0044464 cell part 17.41% (39/224) 2.57 0.0 0.0
GO:0005840 ribosome 9.38% (21/224) 3.82 0.0 0.0
GO:0032991 protein-containing complex 13.84% (31/224) 2.83 0.0 0.0
GO:0043043 peptide biosynthetic process 9.38% (21/224) 3.71 0.0 0.0
GO:0043228 non-membrane-bounded organelle 9.38% (21/224) 3.66 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 9.38% (21/224) 3.66 0.0 0.0
GO:1990904 ribonucleoprotein complex 9.38% (21/224) 3.65 0.0 0.0
GO:0043604 amide biosynthetic process 9.38% (21/224) 3.67 0.0 0.0
GO:0006518 peptide metabolic process 9.38% (21/224) 3.67 0.0 0.0
GO:0043603 cellular amide metabolic process 9.38% (21/224) 3.61 0.0 0.0
GO:0003735 structural constituent of ribosome 8.93% (20/224) 3.67 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 15.18% (34/224) 2.49 0.0 0.0
GO:0019898 extrinsic component of membrane 4.02% (9/224) 6.33 0.0 0.0
GO:0005198 structural molecule activity 8.93% (20/224) 3.57 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 11.16% (25/224) 2.99 0.0 0.0
GO:0006412 translation 8.48% (19/224) 3.61 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 4.02% (9/224) 6.03 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 10.27% (23/224) 3.06 0.0 0.0
GO:1990204 oxidoreductase complex 4.02% (9/224) 5.82 0.0 0.0
GO:0009059 macromolecule biosynthetic process 9.82% (22/224) 3.04 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 9.38% (21/224) 3.09 0.0 0.0
GO:0044444 cytoplasmic part 9.82% (22/224) 2.91 0.0 0.0
GO:0043229 intracellular organelle 9.82% (22/224) 2.84 0.0 0.0
GO:0043226 organelle 9.82% (22/224) 2.84 0.0 0.0
GO:0009523 photosystem II 4.02% (9/224) 5.24 0.0 0.0
GO:0005575 cellular_component 20.54% (46/224) 1.65 0.0 0.0
GO:1901576 organic substance biosynthetic process 11.61% (26/224) 2.42 0.0 0.0
GO:0044436 thylakoid part 4.46% (10/224) 4.73 0.0 0.0
GO:0009058 biosynthetic process 12.05% (27/224) 2.32 0.0 0.0
GO:0044249 cellular biosynthetic process 11.16% (25/224) 2.44 0.0 0.0
GO:0009987 cellular process 25.0% (56/224) 1.37 0.0 0.0
GO:0044237 cellular metabolic process 22.77% (51/224) 1.43 0.0 0.0
GO:0009521 photosystem 4.02% (9/224) 4.73 0.0 0.0
GO:0015979 photosynthesis 4.02% (9/224) 4.56 0.0 0.0
GO:0003676 nucleic acid binding 14.29% (32/224) 1.77 0.0 0.0
GO:0003674 molecular_function 51.34% (115/224) 0.66 0.0 0.0
GO:0003723 RNA binding 5.8% (13/224) 3.09 0.0 0.0
GO:0008150 biological_process 37.05% (83/224) 0.85 0.0 0.0
GO:1902494 catalytic complex 4.02% (9/224) 3.89 0.0 0.0
GO:0008152 metabolic process 28.57% (64/224) 1.0 0.0 0.0
GO:0098796 membrane protein complex 4.02% (9/224) 3.26 1e-06 5e-06
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 2.68% (6/224) 4.28 1e-06 7e-06
GO:0016859 cis-trans isomerase activity 2.68% (6/224) 4.28 1e-06 7e-06
GO:0016853 isomerase activity 3.57% (8/224) 3.47 1e-06 7e-06
GO:0005509 calcium ion binding 4.02% (9/224) 3.03 2e-06 1.7e-05
GO:0043038 amino acid activation 2.23% (5/224) 4.0 1.6e-05 0.000136
GO:0043039 tRNA aminoacylation 2.23% (5/224) 4.0 1.6e-05 0.000136
GO:0004812 aminoacyl-tRNA ligase activity 2.23% (5/224) 4.0 1.6e-05 0.000136
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.23% (5/224) 4.0 1.6e-05 0.000136
GO:0005488 binding 30.8% (69/224) 0.68 2e-05 0.000168
GO:0016874 ligase activity 2.68% (6/224) 3.39 2.6e-05 0.000209
GO:0005737 cytoplasm 2.23% (5/224) 3.77 3.4e-05 0.000276
GO:0006457 protein folding 1.79% (4/224) 4.43 3.6e-05 0.000281
GO:1901363 heterocyclic compound binding 20.98% (47/224) 0.86 3.7e-05 0.000281
GO:0097159 organic cyclic compound binding 20.98% (47/224) 0.86 3.7e-05 0.000281
GO:0042886 amide transport 2.68% (6/224) 3.12 7.2e-05 0.000521
GO:0015031 protein transport 2.68% (6/224) 3.12 7.2e-05 0.000521
GO:0015833 peptide transport 2.68% (6/224) 3.12 7.2e-05 0.000521
GO:0045184 establishment of protein localization 2.68% (6/224) 3.1 7.9e-05 0.000558
GO:0033036 macromolecule localization 2.68% (6/224) 3.07 8.9e-05 0.000611
GO:0008104 protein localization 2.68% (6/224) 3.07 8.9e-05 0.000611
GO:0006807 nitrogen compound metabolic process 16.96% (38/224) 0.92 9.4e-05 0.000633
GO:0003690 double-stranded DNA binding 1.79% (4/224) 4.07 9.7e-05 0.000647
GO:0140101 catalytic activity, acting on a tRNA 2.23% (5/224) 3.36 0.000136 0.000893
GO:0006520 cellular amino acid metabolic process 2.68% (6/224) 2.88 0.000183 0.001181
GO:1901564 organonitrogen compound metabolic process 14.73% (33/224) 0.95 0.000205 0.001306
GO:0019843 rRNA binding 1.34% (3/224) 4.68 0.000211 0.001322
GO:0006399 tRNA metabolic process 2.23% (5/224) 3.19 0.000231 0.001409
GO:0006418 tRNA aminoacylation for protein translation 1.79% (4/224) 3.75 0.000229 0.001413
GO:0016070 RNA metabolic process 4.02% (9/224) 2.14 0.000238 0.001429
GO:0071705 nitrogen compound transport 2.68% (6/224) 2.75 0.000292 0.00173
GO:0071704 organic substance metabolic process 18.75% (42/224) 0.78 0.000344 0.002005
GO:0071702 organic substance transport 2.68% (6/224) 2.69 0.000364 0.002093
GO:0000413 protein peptidyl-prolyl isomerization 1.34% (3/224) 4.33 0.000439 0.002458
GO:0018208 peptidyl-proline modification 1.34% (3/224) 4.33 0.000439 0.002458
GO:0043170 macromolecule metabolic process 15.18% (34/224) 0.87 0.000452 0.002502
GO:0046483 heterocycle metabolic process 5.8% (13/224) 1.57 0.000528 0.002885
GO:0006725 cellular aromatic compound metabolic process 5.8% (13/224) 1.55 0.00059 0.003183
GO:0044267 cellular protein metabolic process 10.27% (23/224) 1.08 0.000632 0.003366
GO:0034660 ncRNA metabolic process 2.23% (5/224) 2.87 0.000651 0.003424
GO:1901360 organic cyclic compound metabolic process 5.8% (13/224) 1.52 0.000718 0.003729
GO:0044281 small molecule metabolic process 4.02% (9/224) 1.9 0.000779 0.004
GO:0140098 catalytic activity, acting on RNA 3.12% (7/224) 2.22 0.000842 0.004272
GO:0044238 primary metabolic process 17.41% (39/224) 0.72 0.001299 0.006508
GO:0006414 translational elongation 0.89% (2/224) 5.1 0.001496 0.007408
GO:0044260 cellular macromolecule metabolic process 11.16% (25/224) 0.89 0.002312 0.011322
GO:0006139 nucleobase-containing compound metabolic process 4.91% (11/224) 1.45 0.002579 0.012483
GO:0018193 peptidyl-amino acid modification 1.34% (3/224) 3.41 0.002845 0.012757
GO:0032561 guanyl ribonucleotide binding 2.23% (5/224) 2.39 0.002834 0.012842
GO:0032549 ribonucleoside binding 2.23% (5/224) 2.39 0.002834 0.012842
GO:0005525 GTP binding 2.23% (5/224) 2.39 0.002834 0.012842
GO:0001883 purine nucleoside binding 2.23% (5/224) 2.39 0.002834 0.012842
GO:0032550 purine ribonucleoside binding 2.23% (5/224) 2.39 0.002834 0.012842
GO:0001882 nucleoside binding 2.23% (5/224) 2.39 0.002834 0.012842
GO:0019001 guanyl nucleotide binding 2.23% (5/224) 2.34 0.00326 0.01403
GO:0003746 translation elongation factor activity 0.89% (2/224) 4.56 0.003207 0.014082
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 0.89% (2/224) 4.56 0.003207 0.014082
GO:0016491 oxidoreductase activity 7.14% (16/224) 1.12 0.003254 0.014146
GO:0090304 nucleic acid metabolic process 4.02% (9/224) 1.52 0.004543 0.019353
GO:0019752 carboxylic acid metabolic process 2.68% (6/224) 1.97 0.004646 0.019403
GO:0043436 oxoacid metabolic process 2.68% (6/224) 1.97 0.004646 0.019403
GO:0006082 organic acid metabolic process 2.68% (6/224) 1.96 0.004723 0.019536
GO:0044425 membrane part 4.91% (11/224) 1.31 0.005351 0.019994
GO:0006450 regulation of translational fidelity 0.45% (1/224) 7.56 0.005309 0.020016
GO:0015995 chlorophyll biosynthetic process 0.45% (1/224) 7.56 0.005309 0.020016
GO:0004817 cysteine-tRNA ligase activity 0.45% (1/224) 7.56 0.005309 0.020016
GO:0006423 cysteinyl-tRNA aminoacylation 0.45% (1/224) 7.56 0.005309 0.020016
GO:0009512 cytochrome b6f complex 0.45% (1/224) 7.56 0.005309 0.020016
GO:0015994 chlorophyll metabolic process 0.45% (1/224) 7.56 0.005309 0.020016
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 0.45% (1/224) 7.56 0.005309 0.020016
GO:0005886 plasma membrane 0.45% (1/224) 7.56 0.005309 0.020016
GO:0051536 iron-sulfur cluster binding 1.34% (3/224) 3.1 0.005284 0.021437
GO:0051540 metal cluster binding 1.34% (3/224) 3.1 0.005284 0.021437
GO:0004827 proline-tRNA ligase activity 0.45% (1/224) 6.56 0.010591 0.038894
GO:0006433 prolyl-tRNA aminoacylation 0.45% (1/224) 6.56 0.010591 0.038894
GO:0046872 metal ion binding 6.7% (15/224) 0.96 0.011533 0.041993
GO:0016651 oxidoreductase activity, acting on NAD(P)H 0.89% (2/224) 3.6 0.011793 0.042574
GO:0043169 cation binding 6.7% (15/224) 0.95 0.012004 0.042972
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.046 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_34 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_86 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_98 0.152 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_106 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_135 0.073 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.052 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.104 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_214 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_227 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_239 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_17 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_23 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_119 0.034 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.061 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_179 0.038 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_191 0.034 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_197 0.064 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_239 0.059 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_244 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_248 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_251 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_261 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_2 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_95 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_128 0.031 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_136 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_65 0.124 Archaeplastida Compare
Gingko biloba HCCA Cluster_111 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_133 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_135 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.046 Archaeplastida Compare
Gingko biloba HCCA Cluster_177 0.032 Archaeplastida Compare
Gingko biloba HCCA Cluster_245 0.058 Archaeplastida Compare
Gingko biloba HCCA Cluster_250 0.048 Archaeplastida Compare
Gingko biloba HCCA Cluster_302 0.043 Archaeplastida Compare
Zea mays HCCA Cluster_3 0.04 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.082 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.054 Archaeplastida Compare
Zea mays HCCA Cluster_107 0.136 Archaeplastida Compare
Zea mays HCCA Cluster_146 0.042 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.034 Archaeplastida Compare
Zea mays HCCA Cluster_185 0.044 Archaeplastida Compare
Zea mays HCCA Cluster_187 0.034 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.07 Archaeplastida Compare
Zea mays HCCA Cluster_268 0.086 Archaeplastida Compare
Zea mays HCCA Cluster_318 0.131 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.149 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_6 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_41 0.038 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_52 0.044 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_65 0.091 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_114 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_115 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_133 0.036 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.053 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.043 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.103 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_46 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_88 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_108 0.173 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_124 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_129 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_160 0.034 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_224 0.074 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_260 0.053 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.038 Archaeplastida Compare
Picea abies HCCA Cluster_27 0.035 Archaeplastida Compare
Picea abies HCCA Cluster_53 0.046 Archaeplastida Compare
Picea abies HCCA Cluster_88 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_145 0.044 Archaeplastida Compare
Picea abies HCCA Cluster_227 0.059 Archaeplastida Compare
Picea abies HCCA Cluster_266 0.083 Archaeplastida Compare
Picea abies HCCA Cluster_269 0.066 Archaeplastida Compare
Picea abies HCCA Cluster_324 0.038 Archaeplastida Compare
Picea abies HCCA Cluster_341 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_362 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_456 0.045 Archaeplastida Compare
Picea abies HCCA Cluster_465 0.032 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_32 0.069 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_97 0.034 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_100 0.04 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_106 0.041 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_140 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_147 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_206 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_25 0.04 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_33 0.043 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_73 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_102 0.044 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.163 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_160 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_169 0.099 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.06 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_219 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_224 0.078 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_253 0.088 Archaeplastida Compare
Vitis vinifera HCCA Cluster_27 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_42 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_52 0.097 Archaeplastida Compare
Vitis vinifera HCCA Cluster_72 0.092 Archaeplastida Compare
Vitis vinifera HCCA Cluster_88 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_93 0.043 Archaeplastida Compare
Vitis vinifera HCCA Cluster_162 0.051 Archaeplastida Compare
Vitis vinifera HCCA Cluster_176 0.047 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.109 Archaeplastida Compare
Vitis vinifera HCCA Cluster_245 0.094 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_1 0.038 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_33 0.045 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_61 0.071 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_78 0.029 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_89 0.029 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_94 0.09 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_119 0.025 Archaeplastida Compare
Sequences (224) (download table)

InterPro Domains

GO Terms

Family Terms