AMTR_s00004p00074220 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.55

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000244 (SeedPlants) Phylogenetic Tree(s): OG_06_0000244_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00004p00074220
Cluster	HCCA: Cluster_122

Target	Alias	Description	ECC score	Gene Family Method
AT3G20750	GATA29	GATA transcription factor 29	0.03	Archaeplastida
AT5G26930	GATA23	GATA transcription factor 23	0.02	Archaeplastida
Cre10.g435450	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01035614001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
Gb_24250	No alias	transcription factor (GATA)	0.03	Archaeplastida
Gb_25568	No alias	transcription factor (GATA)	0.02	Archaeplastida
Gb_34837	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os01g74540.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os02g56250.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os04g45650.2	No alias	transcription factor (GATA)	0.02	Archaeplastida
MA_10436047g0010	No alias	transcription factor (GATA)	0.04	Archaeplastida
MA_120821g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_161258g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_18616g0010	No alias	transcription factor (GATA)	0.03	Archaeplastida
Mp1g03950.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Pp3c20_22630V3.1	No alias	GATA transcription factor 9	0.03	Archaeplastida
Solyc01g060490.4.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc08g066510.3.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e005940_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e006272_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e015260_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e017604_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0004664	prephenate dehydratase activity	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Neighborhood
BP	GO:0006801	superoxide metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Neighborhood
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Neighborhood
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Neighborhood
MF	GO:0016836	hydro-lyase activity	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0019104	DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
BP	GO:0043086	negative regulation of catalytic activity	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Neighborhood
BP	GO:0044092	negative regulation of molecular function	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Neighborhood
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	213	247

External Links

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AMTR_s00004p00074220 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation