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  5. LOC_Os03g51690.2

LOC_Os03g51690.2


Description : transcription factor (KNOX)


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0000802 (SeedPlants) Phylogenetic Tree(s): OG_06_0000802_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g51690.2
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00178300 evm_27.TU.AmTr_v1... Homeobox protein HD1 OS=Brassica napus 0.02 Archaeplastida
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.08 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.07 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.04 Archaeplastida
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.03 Archaeplastida
GSVIVT01004811001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01007715001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
GSVIVT01013790001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01018257001 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
GSVIVT01030488001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01031241001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01038787001 No alias No description available 0.02 Archaeplastida
Gb_00573 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os08g19650.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
MA_114226g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp5g01600.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Pp3c18_18720V3.1 No alias KNOTTED-like from Arabidopsis thaliana 2 0.02 Archaeplastida
Pp3c18_18750V3.1 No alias KNOTTED1-like homeobox gene 6 0.02 Archaeplastida
Pp3c19_5610V3.1 No alias No annotation 0.05 Archaeplastida
Pp3c19_5620V3.1 No alias KNOTTED-like from Arabidopsis thaliana 2 0.03 Archaeplastida
Pp3c21_10320V3.1 No alias KNOTTED-like from Arabidopsis thaliana 2 0.04 Archaeplastida
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.04 Archaeplastida
Solyc01g100510.4.1 No alias transcription factor (KNOX) 0.06 Archaeplastida
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.14 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.09 Archaeplastida
Solyc07g007120.3.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Solyc08g041820.3.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Solyc12g010410.3.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e005170_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.1 Archaeplastida
Zm00001e005547_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida
Zm00001e012294_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.08 Archaeplastida
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 282 321
IPR005539 ELK_dom 242 263
IPR005540 KNOX1 103 144
IPR005541 KNOX2 159 203
No external refs found!