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  5. LOC_Os03g52650.1

LOC_Os03g52650.1


Description : Qa-SNARE component KNOLLE of SNARE cell-plate vesicle fusion complex. SYP1-group Qa-type SNARE component


Gene families : OG0000372 (Archaeplastida) Phylogenetic Tree(s): OG0000372_tree ,
OG_05_0000804 (LandPlants) Phylogenetic Tree(s): OG_05_0000804_tree ,
OG_06_0000894 (SeedPlants) Phylogenetic Tree(s): OG_06_0000894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g52650.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00235020 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.07 Archaeplastida
AMTR_s00045p00039700 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.09 Archaeplastida
AMTR_s00103p00119740 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.1 Archaeplastida
AT1G08560 SYP111, ATSYP111, KN syntaxin of plants 111 0.08 Archaeplastida
GSVIVT01023788001 No alias Syntaxin-112 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01035559001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.2 Archaeplastida
MA_132768g0010 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Smo130326 No alias Vesicle trafficking.SNARE target membrane recognition... 0.07 Archaeplastida
Smo25349 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
Solyc01g109750.2.1 No alias SYP1-group Qa-type SNARE component 0.16 Archaeplastida
Solyc06g053760.3.1 No alias Qa-SNARE component KNOLLE of SNARE cell-plate vesicle... 0.2 Archaeplastida
Zm00001e005594_P001 No alias Qa-SNARE component KNOLLE of SNARE cell-plate vesicle... 0.06 Archaeplastida
Zm00001e011479_P001 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Zm00001e012082_P001 No alias Qa-SNARE component KNOLLE of SNARE cell-plate vesicle... 0.16 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 249 301
IPR006011 Syntaxin_N 42 248
No external refs found!