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  5. LOC_Os03g54040.1

LOC_Os03g54040.1


Description : component psRPL6 of large ribosomal subunit proteome


Gene families : OG0002223 (Archaeplastida) Phylogenetic Tree(s): OG0002223_tree ,
OG_05_0005828 (LandPlants) Phylogenetic Tree(s): OG_05_0005828_tree ,
OG_06_0007430 (SeedPlants) Phylogenetic Tree(s): OG_06_0007430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g54040.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00062p00057610 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.06 Archaeplastida
AT1G05190 emb2394 Ribosomal protein L6 family 0.23 Archaeplastida
Cre09.g415950 No alias Protein biosynthesis.organelle translation... 0.17 Archaeplastida
GSVIVT01030599001 No alias Protein biosynthesis.organelle translation... 0.12 Archaeplastida
Gb_27916 No alias component psRPL6 of large ribosomal subunit proteome 0.1 Archaeplastida
MA_54628g0010 No alias component psRPL6 of large ribosomal subunit proteome 0.05 Archaeplastida
MA_65574g0010 No alias 50S ribosomal protein L6, chloroplastic OS=Spinacia... 0.05 Archaeplastida
Mp1g03630.1 No alias component psRPL6 of large ribosomal subunit proteome 0.21 Archaeplastida
Pp3c11_25510V3.1 No alias Ribosomal protein L6 family 0.16 Archaeplastida
Pp3s128_40V3.1 No alias Ribosomal protein L6 family 0.13 Archaeplastida
Solyc12g100160.3.1 No alias component psRPL6 of large ribosomal subunit proteome 0.17 Archaeplastida
Zm00001e001699_P002 No alias component psRPL6 of large ribosomal subunit proteome 0.19 Archaeplastida
Zm00001e038182_P002 No alias component psRPL6 of large ribosomal subunit proteome 0.19 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 136 210
IPR020040 Ribosomal_L6_a/b-dom 56 128
No external refs found!