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  5. LOC_Os03g55540.1

LOC_Os03g55540.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000103 (Archaeplastida) Phylogenetic Tree(s): OG0000103_tree ,
OG_05_0000039 (LandPlants) Phylogenetic Tree(s): OG_05_0000039_tree ,
OG_06_0000107 (SeedPlants) Phylogenetic Tree(s): OG_06_0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g55540.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00137p00104280 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.08 Archaeplastida
AT1G27730 ZAT10, STZ salt tolerance zinc finger 0.08 Archaeplastida
AT2G28710 No alias C2H2-type zinc finger family protein 0.03 Archaeplastida
AT2G37430 No alias C2H2 and C2HC zinc fingers superfamily protein 0.07 Archaeplastida
AT3G19580 AZF2, ZF2 zinc-finger protein 2 0.06 Archaeplastida
AT3G46080 No alias C2H2-type zinc finger family protein 0.08 Archaeplastida
AT3G46090 ZAT7 C2H2 and C2HC zinc fingers superfamily protein 0.06 Archaeplastida
AT3G49930 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT3G60580 No alias C2H2-like zinc finger protein 0.02 Archaeplastida
AT4G35280 No alias C2H2-like zinc finger protein 0.02 Archaeplastida
AT5G03510 No alias C2H2-type zinc finger family protein 0.03 Archaeplastida
AT5G04340 CZF2, ZAT6, C2H2 zinc finger of Arabidopsis thaliana 6 0.11 Archaeplastida
AT5G04390 No alias C2H2-type zinc finger family protein 0.03 Archaeplastida
AT5G43170 AZF3, ZF3 zinc-finger protein 3 0.03 Archaeplastida
AT5G59820 RHL41, ZAT12 C2H2-type zinc finger family protein 0.05 Archaeplastida
AT5G61470 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
AT5G67450 AZF1, ZF1 zinc-finger protein 1 0.06 Archaeplastida
GSVIVT01018162001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01033678001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01037851001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.07 Archaeplastida
Gb_06485 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Gb_10419 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Gb_10422 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Gb_16414 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Gb_16419 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
Gb_23552 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_10426425g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_109421g0010 No alias C2H2 zinc finger transcription factor 0.09 Archaeplastida
MA_167434g0010 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_19127g0010 No alias C2H2 zinc finger transcription factor 0.08 Archaeplastida
MA_30401g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_5277601g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_602g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_71278g0020 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_837209g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_85675g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_922988g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_93487g0010 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Solyc01g107170.2.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc04g077980.1.1 No alias C2H2 zinc finger transcription factor 0.14 Archaeplastida
Solyc05g054650.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc05g055500.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc06g060740.3.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc12g088390.1.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc12g088400.1.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e001253_P001 No alias C2H2 zinc finger transcription factor 0.08 Archaeplastida
Zm00001e002063_P001 No alias C2H2 zinc finger transcription factor 0.08 Archaeplastida
Zm00001e003057_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e005777_P001 No alias C2H2 zinc finger transcription factor 0.14 Archaeplastida
Zm00001e006181_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e006184_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e011755_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e011756_P001 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
Zm00001e011983_P001 No alias C2H2 zinc finger transcription factor 0.14 Archaeplastida
Zm00001e019349_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e019350_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e023172_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e028782_P001 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
Zm00001e029605_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e038072_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e038074_P001 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
Zm00001e038464_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004664 prephenate dehydratase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009094 L-phenylalanine biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!