LOC_Os03g56140.1

Description : transcription factor (KNOX)

Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0029441 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g56140.1
Cluster	HCCA: Cluster_267

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00026p00162850	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AMTR_s00045p00169620	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
AMTR_s00085p00165180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AT1G23380	KNAT6, KNAT6L, KNAT6S	KNOTTED1-like homeobox gene 6	0.03	Archaeplastida
AT1G62360	BUM1, SHL, STM,...	KNOX/ELK homeobox transcription factor	0.04	Archaeplastida
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01013790001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01018257001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01019880001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Gb_00573	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Gb_10887	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Gb_14469	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Gb_14470	No alias	transcription factor (KNOX)	0.03	Archaeplastida
LOC_Os01g19694.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
LOC_Os03g51710.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
LOC_Os05g03884.1	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Pp3c5_26440V3.1	No alias	KNOTTED1-like homeobox gene 3	0.02	Archaeplastida
Solyc02g081120.4.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Solyc05g005090.4.1	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e005170_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e005545_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e005825_P002	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e011538_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e012293_P001	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e012294_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e017489_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e027562_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e029453_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e032761_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071804	cellular potassium ion transport	IEP	Neighborhood
BP	GO:0071805	potassium ion transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	208	229
IPR008422	Homeobox_KN_domain	299	326
IPR005540	KNOX1	80	119

External Links

No external refs found!

LOC_Os03g56140.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation