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  5. LOC_Os04g01990.1

LOC_Os04g01990.1


Description : Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana (sp|q9ls72|pp261_arath : 370.0)


Gene families : OG0018044 (Archaeplastida) Phylogenetic Tree(s): OG0018044_tree ,
OG_05_0017930 (LandPlants) Phylogenetic Tree(s): OG_05_0017930_tree ,
OG_06_0017489 (SeedPlants) Phylogenetic Tree(s): OG_06_0017489_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g01990.1
Cluster HCCA: Cluster_315

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000715001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Zm00001e006036_P001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 317 364
IPR002885 Pentatricopeptide_repeat 212 262
IPR002885 Pentatricopeptide_repeat 50 77
IPR002885 Pentatricopeptide_repeat 291 312
IPR002885 Pentatricopeptide_repeat 391 415
No external refs found!