LOC_Os04g22240.1

Description : E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana (sp|q8vyz0|orth2_arath : 671.0)

Gene families : OG0002340 (Archaeplastida) Phylogenetic Tree(s): OG0002340_tree ,
OG_05_0002708 (LandPlants) Phylogenetic Tree(s): OG_05_0002708_tree ,
OG_06_0002795 (SeedPlants) Phylogenetic Tree(s): OG_06_0002795_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g22240.1
Cluster	HCCA: Cluster_251

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c10_16970V3.1	No alias	Zinc finger (C3HC4-type RING finger) family protein	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004645	phosphorylase activity	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
MF	GO:0008184	glycogen phosphorylase activity	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
CC	GO:0032993	protein-DNA complex	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:2001070	starch binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR027370	Znf-RING_LisH	500	532
IPR003105	SRA_YDG	275	415

External Links

No external refs found!