LOC_Os04g34030.1

Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana (sp|q84tg3|pub23_arath : 219.0)

Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g34030.1
Cluster	HCCA: Cluster_245

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00199950	evm_27.TU.AmTr_v1...	U-box domain-containing protein 31 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00017p00223570	evm_27.TU.AmTr_v1...	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00030p00130440	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
AMTR_s00030p00159240	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.08	Archaeplastida
AMTR_s00030p00161650	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.09	Archaeplastida
AMTR_s00043p00215340	evm_27.TU.AmTr_v1...	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00069p00038840	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.08	Archaeplastida
AMTR_s00138p00053700	evm_27.TU.AmTr_v1...	U-box domain-containing protein 21 OS=Arabidopsis thaliana	0.06	Archaeplastida
AMTR_s00149p00072640	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT3G02840	No alias	ARM repeat superfamily protein	0.04	Archaeplastida
AT3G11840	PUB24	plant U-box 24	0.05	Archaeplastida
AT3G19380	PUB25	plant U-box 25	0.03	Archaeplastida
AT3G52450	PUB22	plant U-box 22	0.06	Archaeplastida
AT5G37490	No alias	ARM repeat superfamily protein	0.05	Archaeplastida
AT5G65920	No alias	ARM repeat superfamily protein	0.03	Archaeplastida
GSVIVT01031720001	No alias	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_02490	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Gb_02629	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Gb_02633	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
Gb_11650	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Gb_17119	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	Archaeplastida
Gb_19502	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	Archaeplastida
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Gb_29734	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Gb_29851	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g34410.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os02g50460.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os06g13870.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.07	Archaeplastida
MA_10430196g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
MA_10432813g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.05	Archaeplastida
MA_10433846g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_17715g0010	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	Archaeplastida
MA_311559g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	Archaeplastida
MA_33190g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_415344g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
MA_5536318g0010	No alias	no hits & (original description: none)	0.07	Archaeplastida
MA_58844g0020	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
MA_61761g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	Archaeplastida
MA_779502g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
MA_84154g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
MA_9494855g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Mp3g22740.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Mp7g11000.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Mp7g11020.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Pp3c10_20630V3.1	No alias	plant U-box 22	0.03	Archaeplastida
Pp3c19_3920V3.1	No alias	plant U-box 23	0.02	Archaeplastida
Pp3c4_20710V3.1	No alias	plant U-box 25	0.03	Archaeplastida
Smo104879	No alias	U-box domain-containing protein 25 OS=Arabidopsis thaliana	0.03	Archaeplastida
Smo231257	No alias	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.03	Archaeplastida
Smo403954	No alias	U-box domain-containing protein 25 OS=Arabidopsis thaliana	0.03	Archaeplastida
Smo416356	No alias	U-box domain-containing protein 30 OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc01g005160.4.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g007000.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g007010.2.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007020.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g007030.3.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g007040.4.1	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007050.3.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g009330.1.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
Solyc01g080920.3.1	No alias	No annotation	0.05	Archaeplastida
Solyc01g107980.3.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Solyc04g008100.3.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Solyc06g074140.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.06	Archaeplastida
Solyc11g006030.1.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
Solyc11g068920.1.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Solyc11g068940.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.06	Archaeplastida
Zm00001e000999_P001	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e002598_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e006484_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.07	Archaeplastida
Zm00001e007108_P001	No alias	No annotation	0.07	Archaeplastida
Zm00001e007109_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.08	Archaeplastida
Zm00001e008167_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e014752_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e014766_P001	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Zm00001e015763_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e019173_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e022679_P001	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e022698_P001	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.08	Archaeplastida
Zm00001e036030_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	Neighborhood
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
MF	GO:0010181	FMN binding	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015740	C4-dicarboxylate transport	IEP	Neighborhood
BP	GO:0015743	malate transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0015939	pantothenate metabolic process	IEP	Neighborhood
BP	GO:0015940	pantothenate biosynthetic process	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	18	88

External Links

No external refs found!

LOC_Os04g34030.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation