LOC_Os04g38750.1

Description : component psPSRP3 of small ribosomal subunit proteome

Gene families : OG0005987 (Archaeplastida) Phylogenetic Tree(s): OG0005987_tree ,
OG_05_0004988 (LandPlants) Phylogenetic Tree(s): OG_05_0004988_tree ,
OG_06_0006052 (SeedPlants) Phylogenetic Tree(s): OG_06_0006052_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g38750.1
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00055110	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.07	Archaeplastida
AT1G68590	No alias	Ribosomal protein PSRP-3/Ycf65	0.24	Archaeplastida
Cre02.g083950	No alias	Protein biosynthesis.organelle translation...	0.11	Archaeplastida
GSVIVT01031053001	No alias	Protein biosynthesis.organelle translation...	0.18	Archaeplastida
Gb_30016	No alias	component psPSRP3 of small ribosomal subunit proteome	0.13	Archaeplastida
MA_10432955g0010	No alias	component psPSRP3 of small ribosomal subunit proteome	0.1	Archaeplastida
MA_19834g0010	No alias	component psPSRP3 of small ribosomal subunit proteome	0.08	Archaeplastida
Mp2g13520.1	No alias	component psPSRP3 of small ribosomal subunit proteome	0.24	Archaeplastida
Pp3c16_2540V3.1	No alias	Ribosomal protein PSRP-3/Ycf65	0.07	Archaeplastida
Pp3c6_19070V3.1	No alias	Ribosomal protein PSRP-3/Ycf65	0.02	Archaeplastida
Solyc03g034190.3.1	No alias	component psPSRP3 of small ribosomal subunit proteome	0.07	Archaeplastida
Solyc05g009570.3.1	No alias	component psPSRP3 of small ribosomal subunit proteome	0.16	Archaeplastida
Zm00001e041019_P001	No alias	component psPSRP3 of small ribosomal subunit proteome	0.32	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006006	glucose metabolic process	IEP	Neighborhood
BP	GO:0006450	regulation of translational fidelity	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0006801	superoxide metabolic process	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009512	cytochrome b6f complex	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
BP	GO:0010207	photosystem II assembly	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
BP	GO:0015994	chlorophyll metabolic process	IEP	Neighborhood
BP	GO:0015995	chlorophyll biosynthetic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0019318	hexose metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0034755	iron ion transmembrane transport	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046148	pigment biosynthetic process	IEP	Neighborhood
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0050661	NADP binding	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
MF	GO:0051920	peroxiredoxin activity	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
CC	GO:0070069	cytochrome complex	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006924	Ribosomal_PSRP3/Ycf65	130	176

External Links

No external refs found!

LOC_Os04g38750.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation