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  5. LOC_Os04g47040.1

LOC_Os04g47040.1


Description : transcription factor (bHLH)


Gene families : OG0002624 (Archaeplastida) Phylogenetic Tree(s): OG0002624_tree ,
OG_05_0002177 (LandPlants) Phylogenetic Tree(s): OG_05_0002177_tree ,
OG_06_0001598 (SeedPlants) Phylogenetic Tree(s): OG_06_0001598_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g47040.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00048410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
AT4G09820 BHLH42, TT8 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT5G41315 MYC6.2, GL3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
GSVIVT01011123001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
GSVIVT01019750001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Gb_19402 No alias transcription factor (bHLH) 0.02 Archaeplastida
Gb_21415 No alias transcription factor (bHLH) 0.02 Archaeplastida
Gb_32249 No alias Truncated basic helix-loop-helix protein A OS=Pisum... 0.02 Archaeplastida
LOC_Os04g47080.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
MA_96585g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
Smo73360 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Solyc09g065100.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e033106_P004 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e041498_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
CC GO:0005885 Arp2/3 protein complex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0010638 positive regulation of organelle organization IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
CC GO:0015629 actin cytoskeleton IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051130 positive regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR025610 MYC/MYB_N 21 202
IPR011598 bHLH_dom 384 429
No external refs found!