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  5. LOC_Os04g52200.1

LOC_Os04g52200.1


Description : no hits & (original description: none)


Gene families : OG0004709 (Archaeplastida) Phylogenetic Tree(s): OG0004709_tree ,
OG_05_0005978 (LandPlants) Phylogenetic Tree(s): OG_05_0005978_tree ,
OG_06_0005881 (SeedPlants) Phylogenetic Tree(s): OG_06_0005881_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g52200.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00256580 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
Cpa|evm.model.tig00000893.5 No alias No description available 0.02 Archaeplastida
Cre16.g685200 No alias No description available 0.07 Archaeplastida
GSVIVT01012163001 No alias Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.06 Archaeplastida
MA_514361g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g081940.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e041627_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e042214_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 684 758
IPR000504 RRM_dom 783 850
IPR000504 RRM_dom 376 440
IPR000504 RRM_dom 564 626
IPR000504 RRM_dom 25 93
No external refs found!