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  5. LOC_Os04g58320.2

LOC_Os04g58320.2


Description : RING-HC-class E3 ligase


Gene families : OG0001188 (Archaeplastida) Phylogenetic Tree(s): OG0001188_tree ,
OG_05_0077972 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0066743 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g58320.2
Cluster HCCA: Cluster_327

Target Alias Description ECC score Gene Family Method Actions
AT3G47160 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G01520 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01002021001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01010297001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
Solyc02g078460.3.1 No alias RING-HC-class E3 ligase 0.04 Archaeplastida
Solyc10g009020.3.1 No alias RING-HC-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006308 DNA catabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0046658 anchored component of plasma membrane IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!