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  5. LOC_Os04g59380.1

LOC_Os04g59380.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000798 (Archaeplastida) Phylogenetic Tree(s): OG0000798_tree ,
OG_05_0000584 (LandPlants) Phylogenetic Tree(s): OG_05_0000584_tree ,
OG_06_0001187 (SeedPlants) Phylogenetic Tree(s): OG_06_0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g59380.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00197580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00088p00164330 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00199p00026650 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AT1G11490 No alias zinc finger (C2H2 type) family protein 0.04 Archaeplastida
AT1G75710 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
AT4G27240 No alias zinc finger (C2H2 type) family protein 0.04 Archaeplastida
AT5G54630 No alias zinc finger protein-related 0.03 Archaeplastida
GSVIVT01008819001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01008925001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
GSVIVT01014576001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01024778001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
Gb_08005 No alias C2H2 zinc finger transcription factor. sugar efflux... 0.01 Archaeplastida
Gb_25842 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Gb_31385 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os01g57650.1 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
LOC_Os03g15790.1 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
LOC_Os06g46910.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
MA_13576g0010 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_525155g0010 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_5608g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc04g081370.2.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc07g063970.3.1 No alias C2H2 zinc finger transcription factor 0.01 Archaeplastida
Zm00001e019606_P002 No alias C2H2 zinc finger transcription factor 0.12 Archaeplastida
Zm00001e028937_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e040454_P002 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!