AT1G30100 (ATNCED5, NCED5)

Aliases : ATNCED5, NCED5

Description : nine-cis-epoxycarotenoid dioxygenase 5

Gene families : OG0000267 (Archaeplastida) Phylogenetic Tree(s): OG0000267_tree ,
OG_05_0001191 (LandPlants) Phylogenetic Tree(s): OG_05_0001191_tree ,
OG_06_0001076 (SeedPlants) Phylogenetic Tree(s): OG_06_0001076_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G30100
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00256590	evm_27.TU.AmTr_v1...	Zeaxanthin 7,8(7,8)-cleavage dioxygenase, chromoplastic...	0.03	Archaeplastida
AT4G18350	NCED2, ATNCED2	nine-cis-epoxycarotenoid dioxygenase 2	0.06	Archaeplastida
GSVIVT01038080001	No alias	Enzyme classification.EC_1 oxidoreductases.EC_1.13...	0.02	Archaeplastida
Gb_04986	No alias	carotenoid cleavage dioxygenase (CCD4)	0.02	Archaeplastida
Gb_07367	No alias	carotenoid cleavage dioxygenase (CCD4). neoxanthin...	0.04	Archaeplastida
Gb_14131	No alias	carotenoid cleavage dioxygenase (CCD4). neoxanthin...	0.03	Archaeplastida
Gb_33714	No alias	carotenoid cleavage dioxygenase (CCD4). neoxanthin...	0.02	Archaeplastida
MA_10428505g0020	No alias	neoxanthin cleavage protein	0.04	Archaeplastida
Mp3g20700.1	No alias	neoxanthin cleavage protein	0.04	Archaeplastida
Pp3c16_17210V3.1	No alias	nine-cis-epoxycarotenoid dioxygenase 3	0.01	Archaeplastida
Smo94524	No alias	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic...	0.02	Archaeplastida
Solyc05g053530.1.1	No alias	neoxanthin cleavage protein	0.03	Archaeplastida
Solyc08g075480.4.1	No alias	carotenoid cleavage dioxygenase (CCD4)	0.04	Archaeplastida
Solyc08g075490.4.1	No alias	carotenoid cleavage dioxygenase (CCD4)	0.04	Archaeplastida
Zm00001e012402_P001	No alias	neoxanthin cleavage protein	0.03	Archaeplastida
Zm00001e032833_P001	No alias	neoxanthin cleavage protein	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006714	sesquiterpenoid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009414	response to water deprivation	IGI	Interproscan
BP	GO:0009415	response to water	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009687	abscisic acid metabolic process	None	Extended
BP	GO:0009688	abscisic acid biosynthetic process	IMP	Interproscan
BP	GO:0009688	abscisic acid biosynthetic process	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010162	seed dormancy process	IGI	Interproscan
MF	GO:0010436	carotenoid dioxygenase activity	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016106	sesquiterpenoid biosynthetic process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	None	Extended
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043288	apocarotenoid metabolic process	None	Extended
BP	GO:0043289	apocarotenoid biosynthetic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	TAS	Interproscan
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051213	dioxygenase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902644	tertiary alcohol metabolic process	None	Extended
BP	GO:1902645	tertiary alcohol biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
BP	GO:0001666	response to hypoxia	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
BP	GO:0002684	positive regulation of immune system process	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004022	alcohol dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0004871	obsolete signal transducer activity	IEP	Neighborhood
MF	GO:0008395	steroid hydroxylase activity	IEP	Neighborhood
BP	GO:0009061	anaerobic respiration	IEP	Neighborhood
BP	GO:0009403	toxin biosynthetic process	IEP	Neighborhood
BP	GO:0009638	phototropism	IEP	Neighborhood
BP	GO:0009700	indole phytoalexin biosynthetic process	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009741	response to brassinosteroid	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
BP	GO:0009830	cell wall modification involved in abscission	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009870	defense response signaling pathway, resistance gene-dependent	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
MF	GO:0010012	steroid 22-alpha hydroxylase activity	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010022	meristem determinacy	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010065	primary meristem tissue development	IEP	Neighborhood
BP	GO:0010067	procambium histogenesis	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010101	post-embryonic root morphogenesis	IEP	Neighborhood
BP	GO:0010102	lateral root morphogenesis	IEP	Neighborhood
BP	GO:0010120	camalexin biosynthetic process	IEP	Neighborhood
BP	GO:0010252	auxin homeostasis	IEP	Neighborhood
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IEP	Neighborhood
MF	GO:0010297	heteropolysaccharide binding	IEP	Neighborhood
MF	GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	IEP	Neighborhood
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	Neighborhood
BP	GO:0010432	bract development	IEP	Neighborhood
BP	GO:0010451	floral meristem growth	IEP	Neighborhood
BP	GO:0010582	floral meristem determinacy	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016881	acid-amino acid ligase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
BP	GO:0031349	positive regulation of defense response	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0035266	meristem growth	IEP	Neighborhood
BP	GO:0036293	response to decreased oxygen levels	IEP	Neighborhood
BP	GO:0042762	regulation of sulfur metabolic process	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0044277	cell wall disassembly	IEP	Neighborhood
BP	GO:0045089	positive regulation of innate immune response	IEP	Neighborhood
BP	GO:0045333	cellular respiration	IEP	Neighborhood
BP	GO:0046217	indole phytoalexin metabolic process	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048508	embryonic meristem development	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0048584	positive regulation of response to stimulus	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0050778	positive regulation of immune response	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0051176	positive regulation of sulfur metabolic process	IEP	Neighborhood
BP	GO:0051193	regulation of cofactor metabolic process	IEP	Neighborhood
MF	GO:0051749	indole acetic acid carboxyl methyltransferase activity	IEP	Neighborhood
BP	GO:0052031	modulation by symbiont of host defense response	IEP	Neighborhood
BP	GO:0052033	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	IEP	Neighborhood
BP	GO:0052166	positive regulation by symbiont of host innate immune response	IEP	Neighborhood
BP	GO:0052167	modulation by symbiont of host innate immune response	IEP	Neighborhood
BP	GO:0052169	pathogen-associated molecular pattern dependent modulation by symbiont of host innate immune response	IEP	Neighborhood
BP	GO:0052173	response to defenses of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052200	response to host defenses	IEP	Neighborhood
BP	GO:0052255	modulation by organism of defense response of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052257	pathogen-associated molecular pattern dependent induction by organism of innate immune response of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052305	positive regulation by organism of innate immune response in other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052306	modulation by organism of innate immune response in other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052308	pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052314	phytoalexin metabolic process	IEP	Neighborhood
BP	GO:0052315	phytoalexin biosynthetic process	IEP	Neighborhood
BP	GO:0052317	camalexin metabolic process	IEP	Neighborhood
BP	GO:0052318	regulation of phytoalexin metabolic process	IEP	Neighborhood
BP	GO:0052319	regulation of phytoalexin biosynthetic process	IEP	Neighborhood
BP	GO:0052320	positive regulation of phytoalexin metabolic process	IEP	Neighborhood
BP	GO:0052322	positive regulation of phytoalexin biosynthetic process	IEP	Neighborhood
BP	GO:0052509	positive regulation by symbiont of host defense response	IEP	Neighborhood
BP	GO:0052510	positive regulation by organism of defense response of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052552	modulation by organism of immune response of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052553	modulation by symbiont of host immune response	IEP	Neighborhood
BP	GO:0052555	positive regulation by organism of immune response of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052556	positive regulation by symbiont of host immune response	IEP	Neighborhood
BP	GO:0052564	response to immune response of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052572	response to host immune response	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0070482	response to oxygen levels	IEP	Neighborhood
BP	GO:0070542	response to fatty acid	IEP	Neighborhood
BP	GO:0071398	cellular response to fatty acid	IEP	Neighborhood
BP	GO:0075136	response to host	IEP	Neighborhood
BP	GO:0080086	stamen filament development	IEP	Neighborhood
BP	GO:0090506	axillary shoot meristem initiation	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1900376	regulation of secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:1900378	positive regulation of secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:1901182	regulation of camalexin biosynthetic process	IEP	Neighborhood
BP	GO:1901183	positive regulation of camalexin biosynthetic process	IEP	Neighborhood
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004294	Carotenoid_Oase	120	580

External Links

No external refs found!

AT1G30100 (ATNCED5, NCED5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation