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  5. LOC_Os05g03900.2

LOC_Os05g03900.2


Description : transcription factor (WRKY)


Gene families : OG0000007 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000087 (LandPlants) Phylogenetic Tree(s): OG_05_0000087_tree ,
OG_06_0071894 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g03900.2
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00208940 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.WRKY... 0.02 Archaeplastida
AMTR_s00078p00145410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.WRKY... 0.03 Archaeplastida
AMTR_s00088p00164440 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.WRKY... 0.02 Archaeplastida
GSVIVT01028823001 No alias RNA biosynthesis.transcriptional activation.WRKY... 0.05 Archaeplastida
LOC_Os02g16540.1 No alias transcription factor (WRKY) 0.03 Archaeplastida
LOC_Os10g42850.1 No alias transcription factor (WRKY) 0.03 Archaeplastida
MA_124797g0010 No alias transcription factor (WRKY) 0.03 Archaeplastida
MA_179641g0010 No alias transcription factor (WRKY) 0.02 Archaeplastida
MA_54954g0010 No alias transcription factor (WRKY) 0.03 Archaeplastida
MA_6790522g0010 No alias transcription factor (WRKY) 0.03 Archaeplastida
MA_892467g0010 No alias transcription factor (WRKY) 0.03 Archaeplastida
MA_93790g0010 No alias transcription factor (WRKY) 0.02 Archaeplastida
Solyc02g067430.3.1 No alias transcription factor (WRKY) 0.03 Archaeplastida
Solyc05g015850.4.1 No alias transcription factor (WRKY) 0.03 Archaeplastida
Zm00001e005219_P001 No alias transcription factor (WRKY) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005779 integral component of peroxisomal membrane IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
BP GO:0016559 peroxisome fission IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030151 molybdenum ion binding IEP Neighborhood
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048285 organelle fission IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003657 WRKY_dom 40 60
IPR003657 WRKY_dom 123 164
No external refs found!