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Description : Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana (sp|q9sy69|ppr29_arath : 397.0)
Gene families : OG0004773 (Archaeplastida) Phylogenetic Tree(s): OG0004773_tree ,
OG_05_0003293 (LandPlants) Phylogenetic Tree(s): OG_05_0003293_tree ,
OG_06_0001998 (SeedPlants) Phylogenetic Tree(s): OG_06_0001998_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os05g30240.1 | |
| Cluster | HCCA: Cluster_242 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00021p00236970 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g49240,... | 0.03 | Archaeplastida | |
| AT3G49240 | emb1796 | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Archaeplastida | |
| GSVIVT01023159001 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.03 | Archaeplastida | |
| Gb_33759 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.07 | Archaeplastida | |
| MA_118904g0010 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.03 | Archaeplastida | |
| Solyc01g103160.3.1 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.07 | Archaeplastida | |
| Solyc03g083280.4.1 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.04 | Archaeplastida | |
| Zm00001e004732_P001 | No alias | Pentatricopeptide repeat-containing protein At1g10270... | 0.05 | Archaeplastida | |
| Zm00001e020614_P001 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.05 | Archaeplastida | |
| Zm00001e032163_P001 | No alias | Pentatricopeptide repeat-containing protein At3g49240,... | 0.1 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | Neighborhood |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0003909 | DNA ligase activity | IEP | Neighborhood |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006310 | DNA recombination | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| MF | GO:0010181 | FMN binding | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Neighborhood |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| BP | GO:0030488 | tRNA methylation | IEP | Neighborhood |
| CC | GO:0030684 | preribosome | IEP | Neighborhood |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Neighborhood |
| CC | GO:0032040 | small-subunit processome | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| CC | GO:0034708 | methyltransferase complex | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Neighborhood |
| MF | GO:0051540 | metal cluster binding | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 399 | 446 |
| IPR002885 | Pentatricopeptide_repeat | 182 | 230 |
| IPR002885 | Pentatricopeptide_repeat | 367 | 390 |
| IPR002885 | Pentatricopeptide_repeat | 476 | 502 |
| IPR002885 | Pentatricopeptide_repeat | 149 | 172 |
| IPR002885 | Pentatricopeptide_repeat | 257 | 284 |
| IPR002885 | Pentatricopeptide_repeat | 503 | 534 |
| No external refs found! |