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  5. LOC_Os05g38000.1

LOC_Os05g38000.1


Description : PRONE-type RopGEF guanine nucleotide exchange factor


Gene families : OG0000251 (Archaeplastida) Phylogenetic Tree(s): OG0000251_tree ,
OG_05_0000833 (LandPlants) Phylogenetic Tree(s): OG_05_0000833_tree ,
OG_06_0001817 (SeedPlants) Phylogenetic Tree(s): OG_06_0001817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g38000.1
Cluster HCCA: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00249740 evm_27.TU.AmTr_v1... Multi-process regulation.Rop GTPase regulatory... 0.03 Archaeplastida
AMTR_s00109p00064220 evm_27.TU.AmTr_v1... Multi-process regulation.Rop GTPase regulatory... 0.03 Archaeplastida
AMTR_s00165p00047580 evm_27.TU.AmTr_v1... Multi-process regulation.Rop GTPase regulatory... 0.02 Archaeplastida
AT1G52240 ATROPGEF11,... RHO guanyl-nucleotide exchange factor 11 0.03 Archaeplastida
AT2G45890 ATROPGEF4, RHS11, ROPGEF4 RHO guanyl-nucleotide exchange factor 4 0.04 Archaeplastida
AT3G16130 PIRF2, ROPGEF13,... RHO guanyl-nucleotide exchange factor 13 0.02 Archaeplastida
AT3G24620 ROPGEF8, ATROPGEF8 RHO guanyl-nucleotide exchange factor 8 0.03 Archaeplastida
AT4G00460 ROPGEF3, ATROPGEF3 RHO guanyl-nucleotide exchange factor 3 0.04 Archaeplastida
AT4G13240 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 0.04 Archaeplastida
AT5G02010 ROPGEF7, ATROPGEF7 RHO guanyl-nucleotide exchange factor 7 0.05 Archaeplastida
GSVIVT01015369001 No alias Multi-process regulation.Rop GTPase regulatory... 0.04 Archaeplastida
GSVIVT01017070001 No alias Multi-process regulation.Rop GTPase regulatory... 0.04 Archaeplastida
GSVIVT01023897001 No alias Multi-process regulation.Rop GTPase regulatory... 0.03 Archaeplastida
GSVIVT01034063001 No alias Multi-process regulation.Rop GTPase regulatory... 0.04 Archaeplastida
Gb_04468 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.02 Archaeplastida
LOC_Os01g48410.1 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.04 Archaeplastida
LOC_Os04g47170.1 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.05 Archaeplastida
LOC_Os10g40270.1 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.05 Archaeplastida
MA_2791g0010 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.04 Archaeplastida
MA_79976g0010 No alias Rho guanine nucleotide exchange factor 8 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c1_36410V3.1 No alias RHO guanyl-nucleotide exchange factor 7 0.01 Archaeplastida
Pp3c2_4460V3.1 No alias RHO guanyl-nucleotide exchange factor 7 0.02 Archaeplastida
Smo43109 No alias Multi-process regulation.Rop GTPase regulatory... 0.03 Archaeplastida
Solyc01g094610.4.1 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.05 Archaeplastida
Solyc09g011480.3.1 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.02 Archaeplastida
Zm00001e010284_P002 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.03 Archaeplastida
Zm00001e014205_P002 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.03 Archaeplastida
Zm00001e015569_P002 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.03 Archaeplastida
Zm00001e019750_P001 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.04 Archaeplastida
Zm00001e020182_P002 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.02 Archaeplastida
Zm00001e024760_P001 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.03 Archaeplastida
Zm00001e026517_P004 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.03 Archaeplastida
Zm00001e034952_P003 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.02 Archaeplastida
Zm00001e034978_P001 No alias PRONE-type RopGEF guanine nucleotide exchange factor 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR005512 PRONE_dom 104 470
No external refs found!