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  5. LOC_Os05g41390.1

LOC_Os05g41390.1


Description : cyclin (CYCB)


Gene families : OG0000492 (Archaeplastida) Phylogenetic Tree(s): OG0000492_tree ,
OG_05_0000357 (LandPlants) Phylogenetic Tree(s): OG_05_0000357_tree ,
OG_06_0000555 (SeedPlants) Phylogenetic Tree(s): OG_06_0000555_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g41390.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00032080 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCB-type cyclin 0.17 Archaeplastida
AMTR_s00101p00131830 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCB-type cyclin 0.16 Archaeplastida
AT1G16330 CYCB3;1 cyclin b3;1 0.02 Archaeplastida
AT1G20610 CYCB2;3 Cyclin B2;3 0.11 Archaeplastida
AT1G76310 CYCB2;4 CYCLIN B2;4 0.29 Archaeplastida
AT2G17620 CYCB2;1 Cyclin B2;1 0.07 Archaeplastida
AT2G26760 CYCB1;4 Cyclin B1;4 0.13 Archaeplastida
AT3G11520 CYCB1;3, CYC2 CYCLIN B1;3 0.13 Archaeplastida
AT4G35620 CYCB2;2 Cyclin B2;2 0.23 Archaeplastida
AT5G06150 CYCB1;2, CYC1BAT Cyclin family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000769.38 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.04 Archaeplastida
Cre08.g370401 No alias Cyclin-B2-2 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01009895001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.32 Archaeplastida
GSVIVT01025781001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.33 Archaeplastida
GSVIVT01032782001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.33 Archaeplastida
GSVIVT01036739001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.21 Archaeplastida
GSVIVT01037397001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.01 Archaeplastida
Gb_01761 No alias cyclin (CYCB) 0.11 Archaeplastida
Gb_03506 No alias cyclin (CYCB) 0.13 Archaeplastida
Gb_10664 No alias cyclin (CYCB) 0.16 Archaeplastida
Gb_27795 No alias G2/mitotic-specific cyclin-1 OS=Antirrhinum majus... 0.16 Archaeplastida
MA_10393012g0020 No alias G2/mitotic-specific cyclin-2 OS=Antirrhinum majus... 0.11 Archaeplastida
MA_10428837g0030 No alias cyclin (CYCB) 0.13 Archaeplastida
MA_10433093g0020 No alias Cyclin-B2-1 OS=Oryza sativa subsp. indica... 0.17 Archaeplastida
MA_127335g0010 No alias cyclin (CYCB) 0.06 Archaeplastida
MA_19215g0010 No alias no hits & (original description: none) 0.14 Archaeplastida
MA_311439g0010 No alias cyclin (CYCB) 0.13 Archaeplastida
MA_738195g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
Mp2g00590.1 No alias cyclin (CYCB) 0.06 Archaeplastida
Mp5g10030.1 No alias cyclin (CYCB) 0.14 Archaeplastida
Pp3c15_21520V3.1 No alias CYCLIN B2;4 0.08 Archaeplastida
Pp3c9_18910V3.1 No alias CYCLIN B2;4 0.08 Archaeplastida
Smo230742 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.13 Archaeplastida
Solyc01g009040.4.1 No alias cyclin (CYCB) 0.19 Archaeplastida
Solyc02g082820.3.1 No alias cyclin (CYCB) 0.12 Archaeplastida
Solyc03g032190.3.1 No alias cyclin (CYCB) 0.21 Archaeplastida
Solyc04g081660.3.1 No alias Cyclin-B2-4 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc04g082430.3.1 No alias cyclin (CYCB) 0.08 Archaeplastida
Solyc06g073610.3.1 No alias cyclin (CYCB) 0.04 Archaeplastida
Solyc07g066660.4.1 No alias cyclin (CYCB) 0.11 Archaeplastida
Solyc10g078330.2.1 No alias cyclin (CYCB) 0.06 Archaeplastida
Solyc10g080950.2.1 No alias cyclin (CYCB) 0.03 Archaeplastida
Zm00001e007244_P001 No alias cyclin (CYCB) 0.26 Archaeplastida
Zm00001e019528_P002 No alias cyclin (CYCB) 0.19 Archaeplastida
Zm00001e025467_P001 No alias Cyclin-B1-3 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e027336_P001 No alias cyclin (CYCB) 0.1 Archaeplastida
Zm00001e028899_P002 No alias cyclin (CYCB) 0.33 Archaeplastida
Zm00001e030146_P001 No alias cyclin (CYCB) 0.09 Archaeplastida
Zm00001e041485_P001 No alias cyclin (CYCB) 0.25 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 328 443
IPR006671 Cyclin_N 201 325
No external refs found!