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  5. LOC_Os05g42250.1

LOC_Os05g42250.1


Description : cyclic nucleotide-gated cation channel (CNGC)


Gene families : OG0000137 (Archaeplastida) Phylogenetic Tree(s): OG0000137_tree ,
OG_05_0001872 (LandPlants) Phylogenetic Tree(s): OG_05_0001872_tree ,
OG_06_0007961 (SeedPlants) Phylogenetic Tree(s): OG_06_0007961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g42250.1
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00270020 evm_27.TU.AmTr_v1... External stimuli response.temperature.temperature... 0.03 Archaeplastida
GSVIVT01007785001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.05 Archaeplastida
GSVIVT01011487001 No alias External stimuli response.temperature.temperature... 0.03 Archaeplastida
GSVIVT01025208001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.02 Archaeplastida
GSVIVT01029407001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.02 Archaeplastida
Mp3g14660.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.05 Archaeplastida
Smo416791 No alias External stimuli response.temperature.temperature... 0.03 Archaeplastida
Solyc03g116850.3.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
Solyc12g005400.3.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
Zm00001e005735_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e032059_P001 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006808 regulation of nitrogen utilization IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009092 homoserine metabolic process IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010024 phytochromobilin biosynthetic process IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019346 transsulfuration IEP Neighborhood
BP GO:0019566 arabinose metabolic process IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046373 L-arabinose metabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
BP GO:0050667 homocysteine metabolic process IEP Neighborhood
MF GO:0050897 cobalt ion binding IEP Neighborhood
BP GO:0051202 phytochromobilin metabolic process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 182 421
IPR000595 cNMP-bd_dom 516 567
No external refs found!