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  5. LOC_Os05g48990.1

LOC_Os05g48990.1


Description : transcription factor (WOX)


Gene families : OG0000425 (Archaeplastida) Phylogenetic Tree(s): OG0000425_tree ,
OG_05_0000212 (LandPlants) Phylogenetic Tree(s): OG_05_0000212_tree ,
OG_06_0001039 (SeedPlants) Phylogenetic Tree(s): OG_06_0001039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g48990.1
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00149750 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00021p00189010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AMTR_s00023p00181320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT2G01500 PFS2, HOS9, WOX6 Homeodomain-like superfamily protein 0.02 Archaeplastida
AT2G28610 WOX3, PRS1, PRS Homeodomain-like superfamily protein 0.13 Archaeplastida
AT2G33880 STIP, HB-3, WOX9 homeobox-3 0.04 Archaeplastida
AT3G11260 WOX5 WUSCHEL related homeobox 5 0.02 Archaeplastida
AT5G17810 WOX12 WUSCHEL related homeobox 12 0.03 Archaeplastida
GSVIVT01008424001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01009453001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_27283 No alias transcription factor (WOX) 0.03 Archaeplastida
Gb_29958 No alias transcription factor (WOX) 0.02 Archaeplastida
LOC_Os01g63510.1 No alias transcription factor (WOX) 0.04 Archaeplastida
MA_10234279g0010 No alias transcription factor (WOX) 0.04 Archaeplastida
MA_10344604g0010 No alias transcription factor (WOX) 0.03 Archaeplastida
MA_8832398g0010 No alias transcription factor (WOX) 0.05 Archaeplastida
MA_8850184g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g118770.4.1 No alias transcription factor (WOX) 0.04 Archaeplastida
Solyc06g072890.3.1 No alias transcription factor (WOX) 0.02 Archaeplastida
Solyc06g075567.1.1 No alias transcription factor (WOX) 0.05 Archaeplastida
Solyc11g072770.2.1 No alias transcription factor (WOX) 0.03 Archaeplastida
Solyc11g072790.2.1 No alias transcription factor (WOX) 0.03 Archaeplastida
Zm00001e006644_P002 No alias transcription factor (WOX) 0.07 Archaeplastida
Zm00001e009121_P001 No alias transcription factor (WOX) 0.03 Archaeplastida
Zm00001e019245_P001 No alias transcription factor (WOX) 0.02 Archaeplastida
Zm00001e024169_P001 No alias transcription factor (WOX) 0.04 Archaeplastida
Zm00001e028720_P001 No alias transcription factor (WOX) 0.03 Archaeplastida
Zm00001e029534_P001 No alias transcription factor (WOX) 0.1 Archaeplastida
Zm00001e032433_P003 No alias transcription factor (WOX) 0.14 Archaeplastida
Zm00001e038272_P001 No alias transcription factor (WOX) 0.03 Archaeplastida
Zm00001e041785_P001 No alias transcription factor (WOX) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 70 129
No external refs found!