AMTR_s00006p00267430 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.302

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor

Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00006p00267430
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method
AT1G27045	No alias	Homeobox-leucine zipper protein family	0.02	Archaeplastida
AT3G01220	ATHB20, HB20	homeobox protein 20	0.04	Archaeplastida
AT5G03790	HB51, ATHB51, LMI1	homeobox 51	0.02	Archaeplastida
AT5G15150	ATHB3, HB-3, ATHB-3, HAT7	homeobox 3	0.04	Archaeplastida
GSVIVT01020033001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
GSVIVT01020078001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
Gb_04698	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os09g29460.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
MA_10428916g0010	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
MA_130615g0020	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Pp3c14_21620V3.1	No alias	homeobox protein 6	0.02	Archaeplastida
Pp3c1_36940V3.1	No alias	homeobox protein 16	0.02	Archaeplastida
Pp3c1_37070V3.1	No alias	homeobox protein 16	0.02	Archaeplastida
Pp3c4_7260V3.1	No alias	Homeobox-leucine zipper protein family	0.02	Archaeplastida
Solyc03g034120.3.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc03g034130.4.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Solyc03g082550.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e010218_P001	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e015717_P003	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	Neighborhood
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0005244	voltage-gated ion channel activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0022832	voltage-gated channel activity	IEP	Neighborhood
MF	GO:0022836	gated channel activity	IEP	Neighborhood
MF	GO:0022839	ion gated channel activity	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0060089	molecular transducer activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	42	95
IPR003106	Leu_zip_homeo	97	141

External Links

No external refs found!

AMTR_s00006p00267430 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation