LOC_Os06g01890.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0002864 (LandPlants) Phylogenetic Tree(s): OG_05_0002864_tree ,
OG_06_0070720 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g01890.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00181740	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
AMTR_s00071p00198520	evm_27.TU.AmTr_v1...	Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT2G26320	AGL33	AGAMOUS-like 33	0.03	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.02	Archaeplastida
AT4G37940	AGL21	AGAMOUS-like 21	0.03	Archaeplastida
Gb_05359	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Gb_12586	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_69370g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Smo79393	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.08	Archaeplastida
Solyc01g080785.1.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc02g084630.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc05g056620.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e018993_P001	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008289	lipid binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	94	177
IPR002100	TF_MADSbox	19	66

External Links

No external refs found!

LOC_Os06g01890.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation