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  5. LOC_Os06g06510.1

LOC_Os06g06510.1


Description : histone (H3)


Gene families : OG0000119 (Archaeplastida) Phylogenetic Tree(s): OG0000119_tree ,
OG_05_0000124 (LandPlants) Phylogenetic Tree(s): OG_05_0000124_tree ,
OG_06_0000125 (SeedPlants) Phylogenetic Tree(s): OG_06_0000125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g06510.1
Cluster HCCA: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00168040 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
AMTR_s00030p00044250 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
AT1G09200 No alias Histone superfamily protein 0.13 Archaeplastida
AT3G27360 No alias Histone superfamily protein 0.14 Archaeplastida
AT5G10390 No alias Histone superfamily protein 0.16 Archaeplastida
AT5G10400 No alias Histone superfamily protein 0.12 Archaeplastida
AT5G65360 No alias Histone superfamily protein 0.14 Archaeplastida
Cre02.g104800 No alias Histone H3 OS=Volvox carteri 0.02 Archaeplastida
Cre06.g264650 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
Cre06.g265250 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g266650 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g268350 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g276600 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre12.g504650 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre12.g504800 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre12.g505500 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre12.g506300 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre12.g506500 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre16.g650300 No alias Chromatin organisation.histones.H3-type histone 0.01 Archaeplastida
Cre16.g661450 No alias Cell cycle.mitosis and meiosis.chromosome... 0.05 Archaeplastida
Cre17.g708150 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre17.g709050 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
GSVIVT01025316001 No alias Histone H3.2 OS=Pisum sativum 0.11 Archaeplastida
GSVIVT01025318001 No alias Histone H3.2 OS=Pisum sativum 0.07 Archaeplastida
GSVIVT01026582001 No alias Histone H3.2 OS=Pisum sativum 0.11 Archaeplastida
GSVIVT01027073001 No alias Cell cycle.mitosis and meiosis.chromosome... 0.07 Archaeplastida
GSVIVT01032047001 No alias Histone H3 OS=Volvox carteri 0.07 Archaeplastida
GSVIVT01034510001 No alias Histone H3.2 OS=Pisum sativum 0.05 Archaeplastida
Gb_04505 No alias histone (H3) 0.03 Archaeplastida
Gb_15586 No alias histone (H3) 0.02 Archaeplastida
Gb_19430 No alias histone (H3) 0.04 Archaeplastida
Gb_27618 No alias histone (H3) 0.07 Archaeplastida
Gb_29026 No alias histone (H3) 0.04 Archaeplastida
Gb_29027 No alias histone (H3) 0.09 Archaeplastida
Gb_30564 No alias histone (H3) 0.04 Archaeplastida
Gb_36661 No alias histone (H3) 0.02 Archaeplastida
Gb_40804 No alias histone (H3) 0.03 Archaeplastida
MA_10432805g0020 No alias histone (H3) 0.04 Archaeplastida
MA_113838g0010 No alias histone (H3) 0.04 Archaeplastida
MA_125055g0020 No alias Histone H3.2 OS=Cichorium intybus (sp|q5mya4|h32_cicin : 122.0) 0.04 Archaeplastida
MA_1527811g0010 No alias No annotation 0.02 Archaeplastida
MA_17527g0010 No alias histone (H3) 0.02 Archaeplastida
MA_197719g0010 No alias histone (H3) 0.04 Archaeplastida
MA_210354g0010 No alias histone (H3) 0.02 Archaeplastida
MA_222556g0010 No alias Histone H3.2 OS=Lilium longiflorum (sp|q402e1|h32_lillo : 116.0) 0.02 Archaeplastida
MA_350032g0010 No alias histone (H3) 0.03 Archaeplastida
MA_356208g0010 No alias histone (H3) 0.04 Archaeplastida
MA_561217g0010 No alias histone (H3) 0.03 Archaeplastida
MA_56411g0010 No alias histone (H3) 0.11 Archaeplastida
MA_74555g0010 No alias Histone H3.2 OS=Pisum sativum (sp|p68427|h32_pea : 98.2) 0.02 Archaeplastida
Mp3g09090.1 No alias histone (H3) 0.03 Archaeplastida
Mp3g22050.1 No alias histone H3 variant (CENH3) 0.02 Archaeplastida
Mp7g10700.1 No alias histone (H3) 0.05 Archaeplastida
Mp7g10730.1 No alias histone (H3) 0.08 Archaeplastida
Mp7g16200.1 No alias histone (H3) 0.03 Archaeplastida
Mp7g18030.1 No alias histone (H3) 0.11 Archaeplastida
Pp3c1_20670V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c22_8680V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c23_15100V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c24_11100V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c24_13230V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c8_2810V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Smo171192 No alias Cell cycle.mitosis and meiosis.chromosome... 0.03 Archaeplastida
Smo438193 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
Smo78992 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
Solyc01g074000.3.1 No alias histone (H3) 0.1 Archaeplastida
Solyc01g079110.4.1 No alias histone (H3) 0.13 Archaeplastida
Solyc01g080600.4.1 No alias histone (H3) 0.15 Archaeplastida
Solyc01g086820.4.1 No alias histone (H3) 0.16 Archaeplastida
Solyc01g095650.4.1 No alias histone H3 variant (CENH3) 0.16 Archaeplastida
Solyc02g077480.1.1 No alias histone (H3) 0.13 Archaeplastida
Solyc05g051500.4.1 No alias histone (H3) 0.04 Archaeplastida
Solyc10g008910.1.1 No alias histone (H3) 0.05 Archaeplastida
Solyc11g010230.2.1 No alias histone (H3) 0.04 Archaeplastida
Solyc12g056540.1.1 No alias histone (H3) 0.05 Archaeplastida
Zm00001e008155_P001 No alias histone (H3) 0.04 Archaeplastida
Zm00001e008160_P001 No alias histone (H3) 0.11 Archaeplastida
Zm00001e014760_P001 No alias histone (H3) 0.05 Archaeplastida
Zm00001e016861_P001 No alias histone (H3) 0.11 Archaeplastida
Zm00001e018263_P001 No alias histone (H3) 0.08 Archaeplastida
Zm00001e019170_P001 No alias histone (H3) 0.08 Archaeplastida
Zm00001e036599_P001 No alias histone (H3) 0.06 Archaeplastida
Zm00001e040856_P001 No alias histone (H3) 0.03 Archaeplastida
Zm00001e040876_P001 No alias no hits & (original description: none) 0.12 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!