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  5. LOC_Os06g10600.1

LOC_Os06g10600.1


Description : transcription factor (HD-ZIP IV)


Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0004621 (SeedPlants) Phylogenetic Tree(s): OG_06_0004621_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g10600.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00089530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT1G05230 HDG2 homeodomain GLABROUS 2 0.04 Archaeplastida
AT1G34650 HDG10 homeodomain GLABROUS 10 0.03 Archaeplastida
AT1G79840 GL2 HD-ZIP IV family of homeobox-leucine zipper protein with... 0.02 Archaeplastida
AT4G04890 PDF2 protodermal factor 2 0.07 Archaeplastida
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.07 Archaeplastida
AT5G07260 No alias START (StAR-related lipid-transfer) lipid-binding domain 0.02 Archaeplastida
AT5G52170 HDG7 homeodomain GLABROUS 7 0.03 Archaeplastida
GSVIVT01012643001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01013073001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01027508001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01029396001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01030605001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
MA_10318273g0010 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
MA_10374232g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_10426189g0030 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_10433688g0010 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
MA_1086446g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_110607g0010 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
MA_122121g0010 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
MA_17048g0010 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
MA_305431g0010 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
MA_8859629g0010 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
MA_93471g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Mp7g09710.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Pp3c14_15980V3.1 No alias protodermal factor 2 0.02 Archaeplastida
Pp3c17_16910V3.1 No alias protodermal factor 2 0.05 Archaeplastida
Pp3c1_24020V3.1 No alias protodermal factor 2 0.02 Archaeplastida
Solyc02g080260.4.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Solyc03g031760.4.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc03g098200.4.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Solyc03g120620.3.1 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
Solyc06g072310.3.1 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
Solyc08g076370.3.1 No alias transcription factor (HD-ZIP IV) 0.07 Archaeplastida
Solyc10g005330.3.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Zm00001e002453_P001 No alias transcription factor (HD-ZIP IV) 0.11 Archaeplastida
Zm00001e006870_P004 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
Zm00001e015997_P002 No alias transcription factor (HD-ZIP IV) 0.12 Archaeplastida
Zm00001e017088_P001 No alias transcription factor (HD-ZIP IV) 0.1 Archaeplastida
Zm00001e021649_P002 No alias transcription factor (HD-ZIP IV) 0.11 Archaeplastida
Zm00001e023786_P003 No alias transcription factor (HD-ZIP IV) 0.12 Archaeplastida
Zm00001e033353_P003 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e034755_P001 No alias transcription factor (HD-ZIP IV) 0.1 Archaeplastida
Zm00001e036212_P002 No alias transcription factor (HD-ZIP IV) 0.15 Archaeplastida
Zm00001e039947_P001 No alias transcription factor (HD-ZIP IV) 0.13 Archaeplastida
Zm00001e040312_P001 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
Zm00001e041695_P001 No alias transcription factor (HD-ZIP IV) 0.08 Archaeplastida
Zm00001e042218_P002 No alias transcription factor (HD-ZIP IV) 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 207 454
IPR001356 Homeobox_dom 16 71
No external refs found!