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  5. LOC_Os06g13090.1

LOC_Os06g13090.1


Description : E3 ubiquitin ligase (PUB)


Gene families : OG0003551 (Archaeplastida) Phylogenetic Tree(s): OG0003551_tree ,
OG_05_0002338 (LandPlants) Phylogenetic Tree(s): OG_05_0002338_tree ,
OG_06_0001993 (SeedPlants) Phylogenetic Tree(s): OG_06_0001993_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g13090.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00240140 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.07 Archaeplastida
AT3G47820 PUB39 PLANT U-BOX 39 0.03 Archaeplastida
Gb_13006 No alias E3 ubiquitin ligase (PUB) 0.05 Archaeplastida
Gb_16859 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
LOC_Os09g21740.1 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
MA_252170g0010 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Pp3c1_32770V3.1 No alias plant U-box 38 0.02 Archaeplastida
Zm00001e034032_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036060_P001 No alias E3 ubiquitin ligase (PUB) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003613 Ubox_domain 12 82
No external refs found!