LOC_Os06g21480.1

Description : component RPL31 of LSU proteome component

Gene families : OG0002465 (Archaeplastida) Phylogenetic Tree(s): OG0002465_tree ,
OG_05_0002610 (LandPlants) Phylogenetic Tree(s): OG_05_0002610_tree ,
OG_06_0002770 (SeedPlants) Phylogenetic Tree(s): OG_06_0002770_tree

Sequence : coding (download), protein (download)

1.5

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g21480.1
Cluster	HCCA: Cluster_285

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00233860	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
Cpa\|evm.model.tig00020703.20	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
Cre12.g489153	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
GSVIVT01015251001	No alias	60S ribosomal protein L31 OS=Nicotiana glutinosa	0.03	Archaeplastida
GSVIVT01032061001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
Gb_05851	No alias	component RPL31 of LSU proteome component	0.04	Archaeplastida
Gb_24728	No alias	component RPL31 of LSU proteome component	0.03	Archaeplastida
Mp7g18320.1	No alias	component RPL31 of LSU proteome component	0.04	Archaeplastida
Pp3c10_8090V3.1	No alias	Ribosomal protein L31e family protein	0.07	Archaeplastida
Pp3c25_8980V3.1	No alias	Ribosomal protein L31e family protein	0.03	Archaeplastida
Pp3c2_16490V3.1	No alias	Ribosomal protein L31e family protein	0.02	Archaeplastida
Smo268515	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	Archaeplastida
Solyc05g008010.3.1	No alias	component RPL31 of LSU proteome component	0.04	Archaeplastida
Solyc12g008720.2.1	No alias	component RPL31 of LSU proteome component	0.04	Archaeplastida
Zm00001e015659_P001	No alias	component RPL31 of LSU proteome component	0.04	Archaeplastida
Zm00001e023413_P001	No alias	component RPL31 of LSU proteome component	0.04	Archaeplastida
Zm00001e036927_P001	No alias	component RPL31 of LSU proteome component	0.09	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Neighborhood
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Neighborhood
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
CC	GO:0009349	riboflavin synthase complex	IEP	Neighborhood
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000054	Ribosomal_L31e	15	96

External Links

No external refs found!

LOC_Os06g21480.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation