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  5. LOC_Os06g22760.1

LOC_Os06g22760.1


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g22760.1
Cluster HCCA: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00025p00244880 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00071p00198520 evm_27.TU.AmTr_v1... Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.05 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.03 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.03 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.05 Archaeplastida
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.03 Archaeplastida
AT5G10140 FLC, AGL25, FLF K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01005934001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01025916001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01027579001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Gb_31417 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.05 Archaeplastida
LOC_Os09g02830.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_10432817g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_45349g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Smo235487 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Smo79393 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.03 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e015728_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e022819_P002 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e033123_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009617 response to bacterium IEP Neighborhood
BP GO:0009620 response to fungus IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0042742 defense response to bacterium IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043207 response to external biotic stimulus IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0050832 defense response to fungus IEP Neighborhood
BP GO:0051704 multi-organism process IEP Neighborhood
BP GO:0051707 response to other organism IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0098542 defense response to other organism IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!