AMTR_s00007p00200160 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.174

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL11 component

Gene families : OG0001738 (Archaeplastida) Phylogenetic Tree(s): OG0001738_tree ,
OG_05_0001636 (LandPlants) Phylogenetic Tree(s): OG_05_0001636_tree ,
OG_06_0001883 (SeedPlants) Phylogenetic Tree(s): OG_06_0001883_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00007p00200160
Cluster	HCCA: Cluster_160

Target	Alias	Description	ECC score	Gene Family Method
AT2G42740	RPL16A	ribosomal protein large subunit 16A	0.04	Archaeplastida
AT3G58700	No alias	Ribosomal L5P family protein	0.07	Archaeplastida
AT4G18730	RPL16B	ribosomal protein L16B	0.13	Archaeplastida
AT5G45775	No alias	Ribosomal L5P family protein	0.1	Archaeplastida
Cpa\|evm.model.tig00020610.38	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	Archaeplastida
Cre01.g027000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
GSVIVT01020743001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
GSVIVT01021244001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
Gb_08546	No alias	component RPL11 of LSU proteome component	0.05	Archaeplastida
LOC_Os01g10820.1	No alias	component RPL11 of LSU proteome component	0.09	Archaeplastida
LOC_Os02g14059.1	No alias	component RPL11 of LSU proteome component	0.03	Archaeplastida
LOC_Os05g11710.1	No alias	component RPL11 of LSU proteome component	0.12	Archaeplastida
LOC_Os06g35730.1	No alias	component RPL11 of LSU proteome component	0.13	Archaeplastida
MA_57785g0010	No alias	60S ribosomal protein L11-1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_74060g0010	No alias	component RPL11 of LSU proteome component	0.06	Archaeplastida
MA_86694g0010	No alias	component RPL11 of LSU proteome component	0.13	Archaeplastida
Mp2g24740.1	No alias	component RPL11 of LSU proteome component	0.16	Archaeplastida
Mp6g18870.1	No alias	component RPL11 of LSU proteome component	0.04	Archaeplastida
Pp3c11_8070V3.1	No alias	ribosomal protein L16B	0.08	Archaeplastida
Pp3c1_7710V3.1	No alias	ribosomal protein L16B	0.11	Archaeplastida
Pp3c27_2260V3.1	No alias	Ribosomal L5P family protein	0.12	Archaeplastida
Pp3c2_33280V3.1	No alias	ribosomal protein L16B	0.03	Archaeplastida
Pp3c5_3870V3.1	No alias	Ribosomal L5P family protein	0.11	Archaeplastida
Pp3c7_20160V3.1	No alias	ribosomal protein large subunit 16A	0.09	Archaeplastida
Smo444767	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	Archaeplastida
Solyc02g086240.3.1	No alias	component RPL11 of LSU proteome component	0.09	Archaeplastida
Solyc07g055230.4.1	No alias	component RPL11 of LSU proteome component	0.07	Archaeplastida
Solyc10g007980.3.1	No alias	component RPL11 of LSU proteome component	0.12	Archaeplastida
Solyc12g010930.2.1	No alias	component RPL11 of LSU proteome component	0.1	Archaeplastida
Zm00001e014363_P001	No alias	no hits & (original description: none)	0.09	Archaeplastida
Zm00001e024913_P001	No alias	component RPL11 of LSU proteome component	0.13	Archaeplastida
Zm00001e026886_P003	No alias	component RPL11 of LSU proteome component	0.09	Archaeplastida
Zm00001e037255_P001	No alias	component RPL11 of LSU proteome component	0.09	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Neighborhood
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	Neighborhood
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Neighborhood
CC	GO:0005787	signal peptidase complex	IEP	Neighborhood
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006465	signal peptide processing	IEP	Neighborhood
BP	GO:0006839	mitochondrial transport	IEP	Neighborhood
BP	GO:0007005	mitochondrion organization	IEP	Neighborhood
BP	GO:0007006	mitochondrial membrane organization	IEP	Neighborhood
BP	GO:0007008	outer mitochondrial membrane organization	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022900	electron transport chain	IEP	Neighborhood
BP	GO:0022904	respiratory electron transport chain	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
BP	GO:0045040	protein import into mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0045275	respiratory chain complex III	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
BP	GO:0061024	membrane organization	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
MF	GO:0061135	endopeptidase regulator activity	IEP	Neighborhood
CC	GO:0070069	cytochrome complex	IEP	Neighborhood
BP	GO:0070585	protein localization to mitochondrion	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
BP	GO:0090151	establishment of protein localization to mitochondrial membrane	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
CC	GO:0098803	respiratory chain complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002132	Ribosomal_L5	9	62
IPR002132	Ribosomal_L5	66	165

External Links

No external refs found!

AMTR_s00007p00200160 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation