LOC_Os06g37450.1

Description : transcription factor (GATA)

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0020224 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g37450.1
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00254680	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AMTR_s00064p00107710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00147p00053080	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00148p00049970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT3G54810	BME3-ZF, BME3, GATA8	Plant-specific GATA-type zinc finger transcription...	0.03	Archaeplastida
AT4G34680	GATA3	GATA transcription factor 3	0.03	Archaeplastida
AT5G26930	GATA23	GATA transcription factor 23	0.02	Archaeplastida
Cpa\|evm.model.tig00001094.21	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Cre01.g025050	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Cre06.g266850	No alias	No description available	0.02	Archaeplastida
Cre10.g435450	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01015204001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01018833001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Gb_25568	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os05g06340.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
LOC_Os12g42970.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
MA_10434815g0010	No alias	transcription factor (GATA)	0.04	Archaeplastida
MA_92522g0010	No alias	transcription factor (GATA)	0.03	Archaeplastida
Solyc02g062760.4.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc03g033660.4.1	No alias	transcription factor (GATA)	0.06	Archaeplastida
Solyc05g053500.4.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
Zm00001e015260_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e026601_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e029060_P002	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e032219_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e037876_P002	No alias	transcription factor (GATA)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008374	O-acyltransferase activity	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0016866	intramolecular transferase activity	IEP	Neighborhood
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	203	237

External Links

No external refs found!

LOC_Os06g37450.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation