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  5. LOC_Os06g38510.2

LOC_Os06g38510.2


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g38510.2
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.14 Archaeplastida
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AT1G04680 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.08 Archaeplastida
AT1G30350 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G67750 No alias Pectate lyase family protein 0.06 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.12 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.09 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.09 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G63180 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.12 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.1 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.11 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.1 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Gb_02248 No alias pectate lyase 0.02 Archaeplastida
Gb_19802 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.05 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.07 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.03 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.03 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.02 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.02 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.04 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.02 Archaeplastida
MA_52869g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.04 Archaeplastida
MA_91467g0010 No alias pectate lyase 0.02 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.03 Archaeplastida
MA_956526g0010 No alias pectate lyase 0.02 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.03 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.04 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.04 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c13_1640V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c15_19060V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c17_16370V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_10180V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c1_10470V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_35100V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c2_9460V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3s38_30V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.08 Archaeplastida
Solyc02g087670.3.1 No alias pectate lyase 0.06 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.07 Archaeplastida
Solyc03g058910.3.1 No alias pectate lyase 0.06 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.05 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.07 Archaeplastida
Solyc05g014000.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc06g071020.3.1 No alias pectate lyase 0.03 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc09g008380.3.1 No alias pectate lyase 0.03 Archaeplastida
Solyc09g061890.3.1 No alias pectate lyase 0.04 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.03 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.15 Archaeplastida
Zm00001e029999_P001 No alias pectate lyase 0.02 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 34 84
IPR002022 Pec_lyase 180 364
No external refs found!