LOC_Os06g43220.1

Description : transcription factor (AP2)

Gene families : OG0000068 (Archaeplastida) Phylogenetic Tree(s): OG0000068_tree ,
OG_05_0000603 (LandPlants) Phylogenetic Tree(s): OG_05_0000603_tree ,
OG_06_0000543 (SeedPlants) Phylogenetic Tree(s): OG_06_0000543_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g43220.1
Cluster	HCCA: Cluster_339

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00086450	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00019p00225230	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
AMTR_s00024p00227390	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
AMTR_s00058p00216470	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	Archaeplastida
AMTR_s00065p00077750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00066p00028460	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	Archaeplastida
AT1G72570	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT3G20840	PLT1	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT4G37750	DRG, CKC, CKC1, ANT	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT5G57390	AIL5, EMK, CHO1	AINTEGUMENTA-like 5	0.03	Archaeplastida
Cre08.g385350	No alias	No description available	0.02	Archaeplastida
GSVIVT01002536001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01016352001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01016764001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01023697001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01025307001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01027345001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
Gb_00766	No alias	transcription factor (AP2)	0.02	Archaeplastida
Gb_09764	No alias	transcription factor (AP2)	0.02	Archaeplastida
Gb_11937	No alias	transcription factor (AP2)	0.03	Archaeplastida
Gb_18139	No alias	transcription factor (AP2)	0.04	Archaeplastida
Gb_29561	No alias	transcription factor (AP2)	0.05	Archaeplastida
LOC_Os01g59780.1	No alias	transcription factor (AP2)	0.05	Archaeplastida
LOC_Os03g12950.1	No alias	no description available(sp\|q84z02\|crl5_orysj : 102.0)	0.05	Archaeplastida
LOC_Os07g03250.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
LOC_Os08g34360.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
LOC_Os12g03290.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
MA_10005612g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_101798g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_113625g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_121578g0010	No alias	transcription factor (AP2)	0.02	Archaeplastida
MA_639835g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_8090186g0010	No alias	transcription factor (AP2)	0.03	Archaeplastida
MA_86195g0010	No alias	transcription factor (AP2)	0.02	Archaeplastida
MA_95471g0010	No alias	transcription factor (AP2)	0.03	Archaeplastida
Mp7g13270.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Mp8g11450.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
Pp3c10_24550V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c12_12460V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c15_24980V3.1	No alias	AINTEGUMENTA-like 5	0.02	Archaeplastida
Pp3c23_13360V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Solyc01g096860.3.1	No alias	transcription factor (AP2)	0.02	Archaeplastida
Solyc02g064960.3.1	No alias	transcription factor (AP2)	0.02	Archaeplastida
Solyc02g092050.3.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
Solyc03g044300.3.1	No alias	transcription factor (AP2)	0.02	Archaeplastida
Solyc03g123430.4.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Solyc04g077490.3.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
Solyc11g010710.2.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Solyc12g010490.3.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e000558_P003	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e005817_P003	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e006752_P001	No alias	transcription factor (AP2)	0.07	Archaeplastida
Zm00001e009225_P003	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e015104_P001	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e018951_P001	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e019489_P001	No alias	transcription factor (AP2)	0.02	Archaeplastida
Zm00001e024044_P002	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e027593_P003	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e032754_P003	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e034197_P002	No alias	transcription factor (AP2)	0.02	Archaeplastida
Zm00001e037501_P005	No alias	transcription factor (AP2)	0.04	Archaeplastida
Zm00001e038652_P002	No alias	transcription factor (AP2)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	76	126

External Links

No external refs found!

LOC_Os06g43220.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation