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  5. LOC_Os06g49880.1

LOC_Os06g49880.1


Description : transcription factor (BBX-DBB)


Gene families : OG0000461 (Archaeplastida) Phylogenetic Tree(s): OG0000461_tree ,
OG_05_0021013 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0020210 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g49880.1
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00043350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
AT4G38960 No alias B-box type zinc finger family protein 0.03 Archaeplastida
AT4G39070 No alias B-box zinc finger family protein 0.03 Archaeplastida
Gb_35653 No alias B-box zinc finger protein 18 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g39360.1 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
LOC_Os12g10660.1 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
Zm00001e007720_P001 No alias transcription factor (BBX-DBB) 0.04 Archaeplastida
Zm00001e015053_P001 No alias No annotation 0.04 Archaeplastida
Zm00001e022915_P001 No alias transcription factor (BBX-DBB) 0.06 Archaeplastida
Zm00001e031265_P001 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
Zm00001e034791_P001 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR000315 Znf_B-box 64 105
IPR000315 Znf_B-box 4 47
No external refs found!