LOC_Os07g01820.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002159 (SeedPlants) Phylogenetic Tree(s): OG_06_0002159_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g01820.1
Cluster	HCCA: Cluster_600

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00103080	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
AMTR_s00013p00114420	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT1G26310	AGL10, CAL1, CAL	K-box region and MADS-box transcription factor family protein	0.17	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.02	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.04	Archaeplastida
AT5G62165	AGL42	AGAMOUS-like 42	0.06	Archaeplastida
Cre11.g467577	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008140001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
Gb_41550	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
LOC_Os06g06750.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
MA_15122g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_20180g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_758606g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.01	Archaeplastida
Pp3c12_22500V3.1	No alias	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
Pp3c14_22180V3.1	No alias	AGAMOUS-like 104	0.02	Archaeplastida
Pp3c1_39760V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc03g114840.3.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Solyc06g059970.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.02	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e007902_P001	No alias	transcription factor (MADS/AGL)	0.12	Archaeplastida
Zm00001e012024_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e012026_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e015924_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e023236_P005	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	118	201
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

LOC_Os07g01820.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation