LOC_Os07g03250.1

Description : transcription factor (AP2)

Gene families : OG0000068 (Archaeplastida) Phylogenetic Tree(s): OG0000068_tree ,
OG_05_0000090 (LandPlants) Phylogenetic Tree(s): OG_05_0000090_tree ,
OG_06_0000054 (SeedPlants) Phylogenetic Tree(s): OG_06_0000054_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g03250.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00086450	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00019p00225230	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	Archaeplastida
AMTR_s00024p00227390	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.07	Archaeplastida
AMTR_s00035p00205430	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	Archaeplastida
AMTR_s00058p00216470	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00065p00077750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
AMTR_s00066p00028460	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00202p00017170	evm_27.TU.AmTr_v1...	External stimuli response.biotic...	0.01	Archaeplastida
AT1G51190	PLT2	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT3G20840	PLT1	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT4G37750	DRG, CKC, CKC1, ANT	Integrase-type DNA-binding superfamily protein	0.12	Archaeplastida
AT5G65510	AIL7	AINTEGUMENTA-like 7	0.04	Archaeplastida
AT5G67180	TOE3	target of early activation tagged (EAT) 3	0.02	Archaeplastida
Cre08.g385350	No alias	No description available	0.01	Archaeplastida
GSVIVT01009294001	No alias	AP2-like ethylene-responsive transcription factor ANT...	0.03	Archaeplastida
GSVIVT01016764001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.09	Archaeplastida
GSVIVT01025100001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
GSVIVT01029219001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
Gb_29561	No alias	transcription factor (AP2)	0.04	Archaeplastida
Gb_39931	No alias	transcription factor (AP2)	0.03	Archaeplastida
Gb_41702	No alias	transcription factor (AP2)	0.02	Archaeplastida
LOC_Os06g43220.1	No alias	transcription factor (AP2)	0.04	Archaeplastida
LOC_Os06g44750.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
MA_100701g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_113625g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_121578g0010	No alias	transcription factor (AP2)	0.03	Archaeplastida
MA_196219g0010	No alias	transcription factor (AP2)	0.02	Archaeplastida
MA_67041g0010	No alias	transcription factor (AP2)	0.02	Archaeplastida
MA_86195g0010	No alias	transcription factor (AP2)	0.06	Archaeplastida
MA_98095g0010	No alias	transcription factor (AP2)	0.04	Archaeplastida
Mp7g13270.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Mp8g11450.1	No alias	transcription factor (AP2)	0.06	Archaeplastida
Pp3c15_4400V3.1	No alias	target of early activation tagged (EAT) 2	0.04	Archaeplastida
Pp3c9_25400V3.1	No alias	AINTEGUMENTA-like 5	0.03	Archaeplastida
Solyc02g064960.3.1	No alias	transcription factor (AP2)	0.01	Archaeplastida
Solyc02g092050.3.1	No alias	transcription factor (AP2)	0.08	Archaeplastida
Solyc03g044300.3.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Solyc03g123430.4.1	No alias	transcription factor (AP2)	0.11	Archaeplastida
Solyc04g077490.3.1	No alias	transcription factor (AP2)	0.1	Archaeplastida
Solyc05g051380.4.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Solyc11g008560.2.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Solyc11g010710.2.1	No alias	transcription factor (AP2)	0.05	Archaeplastida
Solyc11g061750.2.1	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e005817_P003	No alias	transcription factor (AP2)	0.15	Archaeplastida
Zm00001e006752_P001	No alias	transcription factor (AP2)	0.06	Archaeplastida
Zm00001e009225_P003	No alias	transcription factor (AP2)	0.03	Archaeplastida
Zm00001e011950_P001	No alias	transcription factor (AP2)	0.01	Archaeplastida
Zm00001e018951_P001	No alias	transcription factor (AP2)	0.02	Archaeplastida
Zm00001e024044_P002	No alias	transcription factor (AP2)	0.02	Archaeplastida
Zm00001e027593_P003	No alias	transcription factor (AP2)	0.02	Archaeplastida
Zm00001e032754_P003	No alias	transcription factor (AP2)	0.11	Archaeplastida
Zm00001e037696_P002	No alias	transcription factor (AP2)	0.02	Archaeplastida
Zm00001e038652_P002	No alias	transcription factor (AP2)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	63	112

External Links

No external refs found!

LOC_Os07g03250.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation