LOC_Os07g03770.1

Description : transcription factor (KNOX)

Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0000802 (SeedPlants) Phylogenetic Tree(s): OG_06_0000802_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g03770.1
Cluster	HCCA: Cluster_276

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00264520	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AMTR_s00023p00178300	evm_27.TU.AmTr_v1...	Homeobox protein HD1 OS=Brassica napus	0.03	Archaeplastida
AMTR_s00026p00162850	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AMTR_s00085p00165180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
AT1G62360	BUM1, SHL, STM,...	KNOX/ELK homeobox transcription factor	0.03	Archaeplastida
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.06	Archaeplastida
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.08	Archaeplastida
AT5G11060	KNAT4	KNOTTED1-like homeobox gene 4	0.03	Archaeplastida
AT5G25220	KNAT3	KNOTTED1-like homeobox gene 3	0.05	Archaeplastida
GSVIVT01004811001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01007715001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01009273001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
GSVIVT01013790001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
GSVIVT01018257001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
GSVIVT01030488001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01031241001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
LOC_Os01g19694.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
LOC_Os08g19650.1	No alias	transcription factor (KNOX)	0.07	Archaeplastida
MA_3582g0010	No alias	transcription factor (KNOX)	0.02	Archaeplastida
MA_9556g0010	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Smo135843	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
Smo159366	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Solyc04g077210.3.1	No alias	transcription factor (KNOX)	0.07	Archaeplastida
Solyc05g005090.4.1	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Solyc08g041820.3.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Solyc08g080120.3.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Solyc12g010410.3.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e005170_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e005545_P001	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e005547_P001	No alias	transcription factor (KNOX)	0.07	Archaeplastida
Zm00001e005825_P002	No alias	transcription factor (KNOX)	0.11	Archaeplastida
Zm00001e012293_P001	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e012294_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e027562_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e029453_P001	No alias	transcription factor (KNOX)	0.09	Archaeplastida
Zm00001e032761_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e039044_P001	No alias	transcription factor (KNOX)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	91	131
IPR008422	Homeobox_KN_domain	276	315
IPR005541	KNOX2	141	185
IPR005539	ELK_dom	236	257

External Links

No external refs found!

LOC_Os07g03770.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation