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  5. LOC_Os07g05650.1

LOC_Os07g05650.1


Description : component NSE3 of homologous recombination repair Smc5-Smc6 complex


Gene families : OG0006357 (Archaeplastida) Phylogenetic Tree(s): OG0006357_tree ,
OG_05_0007812 (LandPlants) Phylogenetic Tree(s): OG_05_0007812_tree ,
OG_06_0007549 (SeedPlants) Phylogenetic Tree(s): OG_06_0007549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g05650.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AT1G34770 No alias CONTAINS InterPro DOMAIN/s: MAGE protein... 0.03 Archaeplastida
Cpa|evm.model.tig00000754.21 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 Archaeplastida
Cre09.g395300 No alias DNA damage response.DNA repair mechanisms.homologous... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008156 negative regulation of DNA replication IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
CC GO:0030915 Smc5-Smc6 complex IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048478 replication fork protection IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
CC GO:0106068 SUMO ligase complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002190 MHD_dom 25 212
No external refs found!