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  5. LOC_Os07g07310.1

LOC_Os07g07310.1


Description : polynucleotide phosphorylase (PNP)


Gene families : OG0001869 (Archaeplastida) Phylogenetic Tree(s): OG0001869_tree ,
OG_05_0002404 (LandPlants) Phylogenetic Tree(s): OG_05_0002404_tree ,
OG_06_0008999 (SeedPlants) Phylogenetic Tree(s): OG_06_0008999_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g07310.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00095690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.03 Archaeplastida
AT3G03710 RIF10, PNP polyribonucleotide nucleotidyltransferase, putative 0.02 Archaeplastida
GSVIVT01029958001 No alias RNA processing.organelle machineries.ribonuclease... 0.03 Archaeplastida
Solyc08g066120.4.1 No alias polynucleotide phosphorylase (PNP) 0.03 Archaeplastida
Solyc08g066140.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 234 294
IPR004088 KH_dom_type_1 697 753
IPR003029 S1_domain 769 830
IPR001247 ExoRNase_PH_dom1 99 229
IPR001247 ExoRNase_PH_dom1 456 590
No external refs found!