1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00008p00089340

AMTR_s00008p00089340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00008.32

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS13 | mtRPS13 component


Gene families : OG0005606 (Archaeplastida) Phylogenetic Tree(s): OG0005606_tree ,
OG_05_0007082 (LandPlants) Phylogenetic Tree(s): OG_05_0007082_tree ,
OG_06_0009507 (SeedPlants) Phylogenetic Tree(s): OG_06_0009507_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00008p00089340
Cluster HCCA: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
AT5G14320 No alias Ribosomal protein S13/S18 family 0.12 Archaeplastida
Cre12.g493950 No alias Protein biosynthesis.organelle translation... 0.06 Archaeplastida
GSVIVT01008933001 No alias Protein biosynthesis.organelle translation... 0.03 Archaeplastida
LOC_Os03g49710.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.08 Archaeplastida
MA_10431241g0010 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.03 Archaeplastida
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.06 Archaeplastida
Pp3c15_12110V3.1 No alias Ribosomal protein S13/S18 family 0.09 Archaeplastida
Pp3c15_12140V3.1 No alias Ribosomal protein S13/S18 family 0.09 Archaeplastida
Solyc05g005880.2.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.04 Archaeplastida
Zm00001e005396_P004 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 47 151
No external refs found!